Hg_chrom5_TN10mRNA_9270
Organism: Heterodera glycines Gene Locus: chr5:2479467-2479750 Feature type: polypeptideProtein Sequence
Length: 54
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.215 | 0.0 | 0.337 | 0.0 | 1.852 | 0.95 | 1.102 | 3.704 | 2.058 | 0.751 | 1.403 | 5.447 | 3.086 | 1.068 | 1.89 | 0.0 | 0.304 | 0.0 | 1.425 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8720
|
— | — |
1.556
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9270
|
17-Not_Clustered
|
0.877
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.648
|
0.034
|
0.330
|
0.074
|
0.013
|
0.025
|
0.010
|
0.243
|
0.505
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002181
|
1.000
|
3.000
|
Hsc_gene_5166.t1;Hsc_gene_5166.t2;Hsc_gene_5166.t3
|
Hsc_gene_5166.t1;Hsc_gene_5166.t2;Hsc_gene_5166.t3;Hsc_gene_5169.t1
|
— | — |
KAI3416186.1 hypothetical protein GPALN_005731 [Globodera pallida]
|
WP_117152462
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
54-54
|
1.000
|
1-53
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
6676.910
|
10.356
|
5.000
|
38.889
|
22.222
|
44.444
|
55.556
|
25.926
|
12.963
|
20.370
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
632.059
|
12.705
|
290.299
|
153.038
|
48.237
|
75.668
|
90.867
|
104.348
|
3252.368
|
35.296
|
1414.041
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.289
|
3.453
|
-0.817
|
-1.697
|
0.663
|
— |
0.358
|
— |
6.452
|
— | — |
11.367
|
— |
No JSON data available for plots.