Hg_chrom5_TN10mRNA_9273
Organism: Heterodera glycines Gene Locus: chr5:2486739-2487892 Feature type: polypeptideProtein Sequence
Length: 189
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.861 | 1.154 | 0.912 | 0.97 | 0.95 | 1.134 | 1.587 | 0.823 | 1.073 | 0.321 | 1.245 | 1.764 | 0.509 | 1.188 | 0.756 | 0.867 | 1.042 | 2.442 | 1.245 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8723
|
— | — |
1.778
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_22522
|
Hg_chrom5_TN10mRNA_9273
|
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
peroxisomal_targeting_signal
|
extracellular
|
— | — | — | — | — | — |
1-20
|
0.993
|
1.000
|
0.000
|
0.000
|
0.400
|
0.117
|
0.062
|
0.335
|
0.418
|
0.492
|
0.284
|
0.042
|
0.367
|
0.692
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002182
|
3.000
|
1.000
|
Hsc_gene_22522.t1
|
Hsc_gene_22522.t1;Hsc_gene_5169.t1
|
— |
P25807.2 Gut-specific cysteine proteinase [Caenorhabditis elegans]
|
AVA09647.1 putative effector protein [Heterodera avenae]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.706|GO:0110165_0.706|GO:0008150_0.694|GO:0003674_0.647|GO:0003824_0.545|GO:0005622_0.508|GO:0005737_0.508
|
IPR000668+20-184_75-179+|IPR013128+84-175+|IPR025660+128-138+|IPR025661+147-166+|IPR038765+64-178+
|
SM00645+20-184+
|
PF00112+75-179+Papain_family_cysteine_protease
|
— |
PTHR12411+84-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-189
|
4i04_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.641
|
21249.870
|
4.992
|
-5.000
|
23.280
|
16.931
|
41.270
|
58.730
|
11.111
|
12.169
|
51.852
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
319.257
|
1.378
|
51.337
|
565.453
|
537.149
|
245.133
|
205.363
|
50.200
|
96.174
|
703.614
|
443.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.991
|
8.545
|
3.570
|
— |
-1.117
|
— |
-2.401
|
2.179
|
-2.984
|
— | — |
-5.792
|
— |