Hg_chrom5_TN10mRNA_9274
Organism: Heterodera glycines Gene Locus: chr5:2490850-2493902 Feature type: polypeptideProtein Sequence
Length: 469
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.893 | 1.438 | 1.163 | 0.441 | 0.924 | 1.148 | 0.736 | 1.706 | 1.137 | 1.469 | 0.905 | 1.129 | 1.658 | 1.107 | 0.609 | 0.609 | 0.839 | 0.872 | 1.148 | 1.066 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8724
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9274
|
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-18
|
0.998
|
1.000
|
1.000
|
1.000
|
0.061
|
0.087
|
0.011
|
0.144
|
0.234
|
0.306
|
0.233
|
0.044
|
0.828
|
0.417
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000793
|
5.000
|
1.000
|
Hsc_gene_5170.t1
|
Hsc_gene_5158.t1;Hsc_gene_5160.t1;Hsc_gene_5170.t1
|
— |
Q92485.2 Acid sphingomyelinase-like phosphodiesterase 3b [Homo sapiens]
|
KAI1714947.1 calcineurin-like phosphoesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.857|GO:0110165_0.857|GO:0008150_0.825|GO:0009987_0.759|GO:0003674_0.673|GO:0008152_0.607|GO:0044237_0.579|GO:0016020_0.574|GO:0003824_0.563|GO:0016787_0.501
|
IPR004843+24-286+|IPR029052+24-344_59-356+|IPR041805+25-321+|IPR045473+300-433+
|
— |
PF00149+24-286+Calcineurin-like_phosphoesterase|PF19272+300-433+Acid_sphingomyelin_phosphodiesterase_C-terminal_region
|
— |
PTHR10340+20-430+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-469
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.500
|
52962.300
|
5.827
|
-6.000
|
24.307
|
14.499
|
44.350
|
55.650
|
12.367
|
11.940
|
48.614
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
purple
|
810.065
|
69.852
|
851.458
|
719.296
|
907.247
|
2391.398
|
1800.890
|
1113.255
|
275.838
|
392.131
|
342.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.381
|
3.229
|
— |
0.303
|
1.412
|
-0.399
|
-1.213
|
0.838
|
— | — | — | — | — |