Hg_chrom5_TN10mRNA_9275
Organism: Heterodera glycines Gene Locus: chr5:2494144-2497307 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 0.928 | 0.932 | 0.786 | 1.235 | 1.315 | 0.678 | 1.14 | 1.583 | 1.425 | 0.95 | 2.514 | 0.791 | 0.657 | 1.163 | 0.57 | 0.794 | 0.907 | 1.096 | 1.006 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8725
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9275
|
27-Not_Clustered
|
0.639
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKIARAFSAIALVKRTLR
|
42-63
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.774
|
0.154
|
0.011
|
0.554
|
0.086
|
0.065
|
0.043
|
0.002
|
0.061
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001308
|
3.000
|
2.000
|
Hsc_gene_5171.t2;Hsc_gene_5171.t3
|
Hsc_gene_5171.t1;Hsc_gene_5171.t2;Hsc_gene_5171.t3
|
— |
A5PKJ4.1 Mitogen-activated protein kinase 7 [Bos taurus]
|
KAI1723952.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.971|GO:0050789_0.890|GO:0065007_0.890|GO:0009987_0.884|GO:0050896_0.861|GO:0003674_0.846|GO:0003824_0.824|GO:0016740_0.824|GO:0005575_0.821|GO:0110165_0.807|GO:0050794_0.806|GO:0016772_0.797|GO:0051716_0.791|GO:0140096_0.778|GO:0005622_0.777|GO:0016301_0.777|GO:0016773_0.764|GO:0004672_0.743|GO:0007154_0.735|GO:0023052_0.733|GO:0007165_0.722|GO:0004674_0.656|GO:0006950_0.632|GO:0035556_0.632|GO:0005737_0.626|GO:0008152_0.624|GO:0141124_0.611|GO:0044237_0.582|GO:0016020_0.573|GO:0043170_0.562|GO:0048518_0.557|GO:0000165_0.556|GO:0044238_0.529|GO:0042221_0.522|GO:0043226_0.522|GO:0009058_0.516|GO:0004707_0.501|GO:0043229_0.501
|
IPR000719+10-295+|IPR008271+126-138+|IPR011009+8-302+|IPR017441+16-40+|IPR050117+9-327+
|
SM00220+10-295+
|
PF00069+10-295+Protein_kinase_domain
|
G3DSA:1.10.510.10:FF:000049+90-306+Mitogen-activated_protein_kinase
|
PTHR24055+9-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
327-351
|
1.000
|
1-326
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
39948.340
|
6.885
|
2.000
|
26.781
|
9.972
|
44.729
|
55.271
|
14.245
|
12.536
|
43.590
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
183.353
|
58.511
|
270.047
|
203.136
|
177.595
|
454.111
|
208.452
|
478.799
|
90.302
|
40.448
|
61.814
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.976
|
1.659
|
-0.301
|
— |
1.367
|
-1.113
|
— |
-1.056
|
— | — | — | — | — |
No JSON data available for plots.