Hg_chrom5_TN10mRNA_9276
Organism: Heterodera glycines Gene Locus: chr5:2494144-2497307 Feature type: polypeptideProtein Sequence
Length: 357
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 0.912 | 0.968 | 0.773 | 1.214 | 1.365 | 0.734 | 1.12 | 1.556 | 1.401 | 0.934 | 2.472 | 0.778 | 0.646 | 1.143 | 0.56 | 0.781 | 0.934 | 1.077 | 0.989 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8725
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9276
|
27-Not_Clustered
|
0.639
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKIARAFSAIALVKRTLR
|
42-63
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.776
|
0.151
|
0.009
|
0.546
|
0.090
|
0.063
|
0.038
|
0.002
|
0.059
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001308
|
3.000
|
2.000
|
Hsc_gene_5171.t2;Hsc_gene_5171.t3
|
Hsc_gene_5171.t1;Hsc_gene_5171.t2;Hsc_gene_5171.t3
|
— |
A5PKJ4.1 Mitogen-activated protein kinase 7 [Bos taurus]
|
KAI1723952.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004707|GO:0005524|GO:0006468
|
GO:0008150_0.971|GO:0009987_0.857|GO:0003674_0.845|GO:0050896_0.834|GO:0050789_0.831|GO:0065007_0.831|GO:0003824_0.827|GO:0016740_0.823|GO:0005575_0.799|GO:0016772_0.796|GO:0110165_0.790|GO:0140096_0.780|GO:0016301_0.776|GO:0050794_0.773|GO:0016773_0.762|GO:0005622_0.753|GO:0004672_0.739|GO:0051716_0.737|GO:0007154_0.703|GO:0023052_0.702|GO:0007165_0.689|GO:0004674_0.626|GO:0005737_0.615|GO:0006950_0.608|GO:0035556_0.601|GO:0008152_0.597|GO:0141124_0.582|GO:0044237_0.573|GO:0043170_0.555|GO:0016020_0.552|GO:0000165_0.529|GO:0048518_0.526|GO:0044238_0.523|GO:0043226_0.501
|
IPR000719+10-301+|IPR003527+45-148+|IPR008271+132-144+|IPR011009+8-308+|IPR017441+16-40+|IPR050117+9-333+
|
SM00220+10-301+
|
PF00069+10-301+Protein_kinase_domain
|
G3DSA:1.10.510.10:FF:000049+96-312+Mitogen-activated_protein_kinase|G3DSA:3.30.200.20:FF:000028+7-121+Mitogen-activated_protein_kinase
|
PTHR24055+9-333+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
333-357
|
1.000
|
1-332
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
40475.880
|
6.685
|
1.000
|
26.611
|
9.804
|
44.538
|
55.462
|
14.006
|
12.605
|
44.258
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
183.353
|
58.511
|
270.047
|
203.136
|
177.595
|
454.111
|
208.452
|
478.799
|
90.302
|
40.448
|
61.814
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.976
|
1.659
|
-0.301
|
— |
1.367
|
-1.113
|
— |
-1.056
|
— | — | — | — | — |
No JSON data available for plots.