Hg_chrom5_TN10mRNA_9279
Organism: Heterodera glycines Gene Locus: chr5:2500332-2502062 Feature type: polypeptideProtein Sequence
Length: 360
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.034 | 1.163 | 1.01 | 1.245 | 0.741 | 1.068 | 1.091 | 1.389 | 1.049 | 0.826 | 1.094 | 0.98 | 1.389 | 0.908 | 0.907 | 0.913 | 0.638 | 0.926 | 1.709 | 1.144 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8727
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_22522
|
Hg_chrom5_TN10mRNA_9279
|
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-22
|
0.957
|
1.000
|
0.000
|
0.000
|
0.214
|
0.197
|
0.082
|
0.320
|
0.187
|
0.201
|
0.174
|
0.043
|
0.178
|
0.742
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002182
|
3.000
|
1.000
|
Hsc_gene_22522.t1
|
Hsc_gene_22522.t1
|
— |
P43510.1 Cathepsin B-like cysteine proteinase 6 [Caenorhabditis elegans]
|
AVA09648.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.742|GO:0110165_0.742|GO:0008150_0.703|GO:0003674_0.655|GO:0005622_0.540|GO:0016020_0.513|GO:0009987_0.503|GO:0005737_0.502
|
IPR000169+121-132+|IPR000668+98-350_98-355_121-136_301-311_318-324+|IPR013128+42-346+|IPR025660+299-309+|IPR025661+318-337+|IPR038765+33-349+
|
SM00645+98-355+
|
PF00112+98-350+Papain_family_cysteine_protease
|
— |
PTHR12411+42-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-360
|
2ipp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
39936.330
|
8.296
|
11.000
|
24.444
|
13.889
|
43.889
|
56.111
|
14.444
|
10.000
|
53.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1360.523
|
5.786
|
442.644
|
3990.974
|
4135.510
|
1866.791
|
1858.036
|
351.619
|
241.117
|
1027.192
|
690.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.023
|
9.286
|
3.280
|
— |
-1.133
|
— |
-2.522
|
2.547
|
— |
4.198
|
2.714
|
— | — |