Hg_chrom5_TN10mRNA_9285
Organism: Heterodera glycines Gene Locus: chr5:2521658-2523339 Feature type: polypeptideProtein Sequence
Length: 258
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.586 | 0.992 | 0.705 | 1.069 | 1.292 | 0.894 | 0.415 | 2.907 | 1.12 | 1.048 | 1.821 | 3.192 | 0.969 | 0.596 | 1.978 | 0.664 | 1.08 | 0.529 | 0.298 | 0.456 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8732
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRTNCHPVKMGRKRQC,KRIKHHLRTTQRKKQKM,KRLSRKKTTEWGKMKFR,KPKRRRIKHHLRTTQRKRRLKRIKHHLRTTQRKKQK
|
13-33
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.766
|
0.175
|
0.025
|
0.305
|
0.153
|
0.033
|
0.063
|
0.022
|
0.071
|
0.505
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000303
|
8.000
|
1.000
|
Hsc_gene_5121.t1
|
— | — | — |
WP_266038932.1 AAA family ATPase [Thermoanaerobacter sp. RKWS2];UZQ83136.1 AAA family ATPase [Thermoanaerobacter sp. RKWS2];HHY79468.1 AAA family ATPase [Thermoanaerobacter sp.]
|
MCX5708715
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
— |
IPR037219+31-203_39-197+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42
|
1.000
|
43-258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
30524.650
|
10.687
|
33.500
|
39.147
|
11.240
|
58.140
|
41.860
|
27.519
|
11.628
|
37.597
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
brown
|
16.852
|
8.748
|
17.897
|
17.592
|
24.070
|
17.904
|
22.423
|
29.798
|
18.680
|
7.808
|
12.467
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
0.872
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.