Hg_chrom5_TN10mRNA_9288
Organism: Heterodera glycines Gene Locus: chr5:2530049-2535180 Feature type: polypeptideProtein Sequence
Length: 477
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 1.463 | 1.182 | 0.434 | 0.908 | 1.129 | 0.774 | 1.677 | 1.118 | 1.417 | 0.889 | 1.11 | 1.805 | 1.089 | 0.642 | 0.659 | 0.756 | 0.858 | 1.129 | 1.048 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8734
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-18
|
0.998
|
1.000
|
1.000
|
1.000
|
0.060
|
0.104
|
0.011
|
0.151
|
0.337
|
0.356
|
0.259
|
0.030
|
0.704
|
0.469
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000793
|
5.000
|
1.000
|
Hsc_gene_5170.t1
|
Hsc_gene_5158.t1;Hsc_gene_5160.t1;Hsc_gene_5170.t1
|
— |
Q92485.2 Acid sphingomyelinase-like phosphodiesterase 3b [Homo sapiens]
|
KAI1714947.1 calcineurin-like phosphoesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.859|GO:0110165_0.854|GO:0008150_0.828|GO:0009987_0.759|GO:0003674_0.671|GO:0008152_0.608|GO:0044237_0.580|GO:0016020_0.569|GO:0003824_0.562
|
IPR004843+24-286+|IPR029052+24-344_59-356+|IPR041805+25-321+|IPR045473+300-434+
|
— |
PF00149+24-286+Calcineurin-like_phosphoesterase|PF19272+300-434+Acid_sphingomyelin_phosphodiesterase_C-terminal_region
|
— |
PTHR10340+20-430+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-477
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
53833.180
|
5.828
|
-6.000
|
24.319
|
14.885
|
44.235
|
55.765
|
12.369
|
11.950
|
48.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
731.591
|
63.406
|
295.705
|
373.291
|
470.137
|
1520.651
|
1372.002
|
768.254
|
797.719
|
778.631
|
786.812
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.992
|
2.421
|
0.445
|
0.300
|
1.709
|
— |
-1.099
|
0.983
|
— | — | — | — | — |