Hg_chrom5_TN10mRNA_9289
Organism: Heterodera glycines Gene Locus: chr5:2533435-2534389 Feature type: polypeptideProtein Sequence
Length: 131
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.42 | 1.065 | 0.694 | 1.316 | 2.163 | 1.174 | 0.545 | 0.763 | 1.527 | 1.238 | 1.041 | 3.143 | 0.424 | 1.321 | 0.779 | 0.218 | 0.501 | 0.347 | 1.762 | 0.674 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8735
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.897
|
0.129
|
0.012
|
0.491
|
0.131
|
0.084
|
0.035
|
0.001
|
0.074
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001308
|
3.000
|
2.000
|
Hsc_gene_5171.t2;Hsc_gene_5171.t3
|
— | — |
O42781.1 Mitogen-activated protein kinase 2 [Pneumocystis carinii]
|
KAH7724642.1 Protein kinase sperm-specific MAP kinase [Aphelenchus avenae]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.919|GO:0005575_0.867|GO:0009987_0.867|GO:0110165_0.851|GO:0005622_0.813|GO:0003674_0.811|GO:0065007_0.806|GO:0050789_0.805|GO:0050896_0.764|GO:0050794_0.756|GO:0051716_0.746|GO:0023052_0.689|GO:0007154_0.687|GO:0003824_0.683|GO:0007165_0.677|GO:0016740_0.649|GO:0140096_0.639|GO:0035556_0.635|GO:0016772_0.633|GO:0141124_0.631|GO:0005737_0.629|GO:0016301_0.629|GO:0016773_0.629|GO:0004672_0.625|GO:0004674_0.602|GO:0000165_0.591|GO:0016020_0.590|GO:0043226_0.575|GO:0008152_0.552|GO:0043229_0.544|GO:0004707_0.541|GO:0006950_0.530|GO:0043227_0.520|GO:0048518_0.518|GO:0043231_0.502
|
IPR011009+2-84+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
107-131
|
1.000
|
1-106
|
3gp0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
14833.120
|
4.494
|
-7.000
|
29.008
|
7.634
|
42.748
|
57.252
|
12.214
|
16.794
|
42.748
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.