Hg_chrom5_TN10mRNA_9293
Organism: Heterodera glycines Gene Locus: chr5:2552007-2553972 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.386 | 0.693 | 0.783 | 0.913 | 1.269 | 0.849 | 0.985 | 1.656 | 1.104 | 1.253 | 0.652 | 1.753 | 0.828 | 0.891 | 1.419 | 0.615 | 0.814 | 1.154 | 0.764 | 0.487 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8739
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.530
|
0.352
|
0.087
|
0.782
|
0.076
|
0.149
|
0.108
|
0.039
|
0.081
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009180
|
1.000
|
1.000
|
Hsc_gene_5139.t1
|
Hsc_gene_5139.t1;Hsc_gene_5145.t1
|
— |
Q9V813.1 S-methyl-5'-thioadenosine phosphorylase [Drosophila melanogaster]
|
KAI1732756.1 phosphorylase superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0009116|GO:0017061
|
GO:0005575_0.652|GO:0110165_0.645|GO:0003674_0.628|GO:0008150_0.620
|
IPR000845+20-264+|IPR010044+16-288_19-291_20-265_21-264+|IPR035994+19-274_19-294+
|
— |
PF01048+20-264+Phosphorylase_superfamily
|
— |
PTHR42679+16-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-302
|
6dz3_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
32953.890
|
6.991
|
3.000
|
26.490
|
8.940
|
42.053
|
57.947
|
14.570
|
11.921
|
51.656
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
788.512
|
91.224
|
270.902
|
1555.208
|
1252.662
|
785.253
|
1381.138
|
316.421
|
535.012
|
928.678
|
759.964
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.341
|
3.955
|
2.631
|
-0.344
|
-0.660
|
0.826
|
-1.420
|
2.270
|
— | — | — | — | — |
No JSON data available for plots.