Hg_chrom5_TN10mRNA_9295
Organism: Heterodera glycines Gene Locus: chr5:2554933-2556656 Feature type: polypeptideProtein Sequence
Length: 306
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.064 | 1.292 | 0.772 | 1.014 | 0.98 | 1.341 | 0.778 | 0.49 | 0.799 | 0.972 | 0.792 | 1.346 | 1.906 | 0.88 | 0.667 | 1.167 | 1.661 | 1.089 | 0.754 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8741
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.131
|
0.020
|
0.004
|
0.207
|
0.225
|
0.356
|
0.145
|
0.017
|
0.814
|
0.266
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000872
|
3.000
|
3.000
|
Hsc_gene_2082.t1;Hsc_gene_8053.t1;Hsc_gene_8055.t1
|
Hsc_gene_2082.t1;Hsc_gene_24358.t1;Hsc_gene_24358.t2;Hsc_gene_24362.t1;Hsc_gene_24362.t2
|
— |
P52011.1 Peptidyl-prolyl cis-trans isomerase 3 [Caenorhabditis elegans]
|
KAH7723155.1 CYN-3 protein [Aphelenchus avenae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755
|
GO:0005575_0.865|GO:0110165_0.865|GO:0016020_0.676|GO:0008150_0.658|GO:0005622_0.622|GO:0003674_0.603|GO:0071944_0.571|GO:0005737_0.555|GO:0005886_0.524|GO:0043226_0.514
|
IPR002130+1-79_4-71_19-34_34-46_47-62+|IPR029000+1-80_3-79+
|
— |
PF00160+4-71+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
— |
PTHR11071+4-75+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;239-306
|
1.000
|
2-238
|
4jcp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.679
|
33065.400
|
5.161
|
-3.500
|
19.608
|
8.824
|
48.693
|
51.307
|
9.477
|
10.131
|
58.497
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
581.034
|
10.397
|
21.052
|
42.426
|
111.968
|
1549.492
|
100.117
|
1716.255
|
9.994
|
1202.637
|
691.504
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
1.891
|
1.122
|
1.369
|
3.805
|
-3.943
|
— |
-3.954
|
-7.054
|
— |
-3.225
|
— | — |
No JSON data available for plots.