Hg_chrom5_TN10mRNA_9296
Organism: Heterodera glycines Gene Locus: chr5:2558439-2571648 Feature type: polypeptideProtein Sequence
Length: 1,830
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.674 | 1.487 | 0.835 | 0.471 | 1.758 | 1.289 | 0.507 | 1.175 | 1.688 | 1.233 | 1.631 | 1.832 | 1.533 | 0.515 | 0.926 | 0.867 | 0.609 | 0.505 | 1.261 | 0.466 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8742
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9296
|
2-Not_Clustered
|
0.512
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKKK,KKAKTKNNRSKEKKSKQ,EKEKKEKIIQKKAKTKNNRSKEKKSK
|
— | — | — | — |
1-24
|
0.797
|
0.739
|
0.000
|
0.000
|
0.487
|
0.185
|
0.005
|
0.584
|
0.140
|
0.134
|
0.167
|
0.019
|
0.102
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001309
|
2.000
|
3.000
|
Hsc_gene_19819.t1;Hsc_gene_19819.t2;Hsc_gene_5134.t1
|
Hsc_gene_5135.t1
|
— | — |
MBN3320334.1 PAPOG polymerase [Atractosteus spatula]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.768|GO:0110165_0.767|GO:0005622_0.713|GO:0016020_0.685|GO:0043226_0.652|GO:0043229_0.636|GO:0008150_0.611|GO:0043227_0.593|GO:0043231_0.558|GO:0003674_0.544|GO:0009987_0.507
|
IPR007012+1521-1661+|IPR011068+1678-1778+|IPR043519+1289-1424_1297-1451+
|
— |
PF04928+1521-1661+Poly(A)_polymerase_central_domain|PF22600+1298-1420+Poly(A)_RNA_polymerase,_mitochondrial-like,_central_palm_domain
|
— |
PTHR10682+1283-1416+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
595-955
|
2.000
|
1-594;956-1830
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
213051.440
|
7.795
|
24.500
|
32.787
|
11.093
|
53.989
|
46.011
|
17.650
|
15.137
|
38.197
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
green
|
1028.473
|
9.880
|
184.428
|
272.766
|
122.818
|
370.307
|
140.327
|
83.297
|
1458.129
|
2962.039
|
2317.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.995
|
4.651
|
0.672
|
-1.180
|
1.605
|
-1.393
|
-2.258
|
0.891
|
— |
-2.237
|
-4.471
|
— | — |