Hg_chrom5_TN10mRNA_9300
Organism: Heterodera glycines Gene Locus: chr5:2582102-2586239 Feature type: polypeptideProtein Sequence
Length: 583
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.558 | 1.316 | 0.873 | 0.414 | 1.458 | 1.1 | 0.592 | 1.029 | 1.982 | 1.53 | 1.273 | 1.11 | 1.811 | 0.594 | 1.05 | 0.858 | 0.703 | 0.598 | 1.319 | 0.656 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8745
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9300
|
21-pJ2_J3
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.560
|
0.253
|
0.007
|
0.537
|
0.188
|
0.135
|
0.153
|
0.008
|
0.089
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009182
|
1.000
|
1.000
|
Hsc_gene_5135.t1
|
Hsc_gene_5131.t1;Hsc_gene_5131.t2
|
— | — |
XP_044756486.1 poly(A) polymerase type 3 [Coccinella septempunctata]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.741|GO:0110165_0.739|GO:0005622_0.692|GO:0016020_0.652|GO:0043226_0.612|GO:0008150_0.597|GO:0043229_0.594|GO:0043227_0.564|GO:0043231_0.551|GO:0003674_0.538
|
IPR007012+276-432+|IPR011068+436-530+|IPR043519+49-182_61-216+
|
— |
PF04928+276-432+Poly(A)_polymerase_central_domain|PF22600+68-180+Poly(A)_RNA_polymerase,_mitochondrial-like,_central_palm_domain
|
— |
PTHR10682+74-562+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-583
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
67748.190
|
7.483
|
6.000
|
29.160
|
12.521
|
49.400
|
50.600
|
15.609
|
13.551
|
38.765
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
436.409
|
2.072
|
10.129
|
59.870
|
21.937
|
12.411
|
33.448
|
7.699
|
84.078
|
1790.892
|
1059.400
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.061
|
4.719
|
2.671
|
-1.482
|
-0.806
|
1.435
|
— |
2.258
|
-4.518
|
— |
-5.853
|
— |
-3.871
|
No JSON data available for plots.