Hg_chrom5_TN10mRNA_9304
Organism: Heterodera glycines Gene Locus: chr5:2603173-2606448 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.531 | 1.254 | 0.905 | 0.715 | 1.141 | 1.17 | 0.469 | 0.622 | 1.798 | 1.402 | 0.534 | 1.587 | 1.441 | 1.157 | 1.482 | 0.978 | 0.578 | 1.037 | 1.436 | 1.22 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8749
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9304
|
15-Not_Clustered
|
0.595
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
14-34
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.066
|
0.061
|
0.004
|
0.123
|
0.525
|
0.290
|
0.414
|
0.007
|
0.674
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004033
|
2.000
|
1.000
|
Hsc_gene_5128.t1
|
Hsc_gene_5128.t1
|
— |
P34672.1 Bestrophin homolog 24 [Caenorhabditis elegans]
|
KAF7629187.1 Bestrophin-like protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005254
|
GO:0008150_0.961|GO:0009987_0.924|GO:0003674_0.867|GO:0051179_0.833|GO:0006810_0.828|GO:0051234_0.828|GO:0055085_0.731|GO:0006811_0.723|GO:0005575_0.694|GO:0110165_0.691|GO:0005215_0.686|GO:0022857_0.685|GO:0022803_0.684|GO:0015267_0.683|GO:0016020_0.644|GO:0034220_0.625|GO:0005216_0.594|GO:0015075_0.594|GO:0006820_0.584|GO:0098656_0.583|GO:0022836_0.581|GO:0022834_0.572|GO:0005253_0.566|GO:0008509_0.566|GO:0071944_0.543|GO:0005886_0.537|GO:0098660_0.518
|
IPR000615+1-393+|IPR021134+9-315+
|
— |
PF01062+9-315+Bestrophin,_RFP-TM,_chloride_channel
|
— |
PTHR10736+1-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
428-482
|
1.000
|
1-427
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
56049.680
|
6.024
|
-2.000
|
23.859
|
12.448
|
44.191
|
55.809
|
12.033
|
11.826
|
44.191
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
493.680
|
199.732
|
110.635
|
75.711
|
31.497
|
148.601
|
306.351
|
1257.874
|
808.196
|
754.804
|
777.686
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.081
|
-1.537
|
-0.440
|
-1.299
|
2.253
|
1.054
|
2.981
|
-1.897
|
— |
-3.243
|
— | — | — |
No JSON data available for plots.