Hg_chrom5_TN10mRNA_9306
Organism: Heterodera glycines Gene Locus: chr5:2607901-2617278 Feature type: polypeptideProtein Sequence
Length: 1,178
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.681 | 1.106 | 0.972 | 0.263 | 1.585 | 1.284 | 0.596 | 1.273 | 1.358 | 1.227 | 1.505 | 1.548 | 0.967 | 0.637 | 1.039 | 0.897 | 0.793 | 0.965 | 1.371 | 0.674 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8750
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9306
|
30-pJ2
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RHRR,RLKAK,KKHEEKQKAQRKKEE,KKVTNWSQDMYKRITK,KKPQNSPPKEKKKVGKAKK,KPQNSPPKEKKKVGKAKKQNAK
|
— | — | — | — |
1-21
|
0.882
|
0.513
|
0.000
|
0.000
|
0.385
|
0.157
|
0.012
|
0.681
|
0.123
|
0.278
|
0.162
|
0.017
|
0.393
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002183
|
2.000
|
2.000
|
Hsc_gene_5127.t1;Hsc_gene_5127.t2
|
Hsc_gene_5127.t1;Hsc_gene_5127.t2
|
— | — | — |
WP_294450578
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
375-430;757-816;864-1015
|
4.000
|
1-374;431-756;817-863;1016-1178
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.607
|
135461.910
|
7.947
|
17.000
|
32.428
|
10.102
|
53.311
|
46.689
|
17.572
|
14.856
|
42.530
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1171.320
|
34.919
|
463.831
|
782.064
|
237.475
|
128.740
|
105.279
|
123.099
|
4999.012
|
671.988
|
2526.427
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.506
|
4.349
|
0.861
|
-1.754
|
-0.868
|
— | — | — |
2.776
|
-2.498
|
— | — | — |