Hg_chrom5_TN10mRNA_9310
Organism: Heterodera glycines Gene Locus: chr5:2637239-2641227 Feature type: polypeptideProtein Sequence
Length: 548
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.976 | 0.976 | 0.564 | 0.566 | 0.608 | 0.608 | 0.782 | 0.73 | 1.46 | 1.874 | 0.387 | 1.503 | 2.078 | 1.018 | 1.006 | 1.408 | 0.808 | 1.023 | 1.123 | 0.698 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8754
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRRR
|
47-68
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.067
|
0.080
|
0.010
|
0.115
|
0.303
|
0.462
|
0.378
|
0.009
|
0.666
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009185
|
1.000
|
1.000
|
Hsc_gene_5124.t1
|
Hsc_gene_5124.t1
|
— |
A0FKN5.1 Prestin [Gallus gallus]
|
KAF7633008.1 Sulfate permease family protein 3 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0055085
|
GO:0008150_0.869|GO:0005575_0.848|GO:0110165_0.848|GO:0016020_0.816|GO:0009987_0.795|GO:0071944_0.783|GO:0005886_0.782|GO:0003674_0.739|GO:0006810_0.705|GO:0051179_0.705|GO:0051234_0.705|GO:0055085_0.659|GO:0005215_0.578|GO:0022857_0.577|GO:0098660_0.528|GO:0015318_0.525|GO:0015698_0.519|GO:0006811_0.515|GO:0034220_0.509|GO:0015103_0.501
|
IPR001902+53-520+|IPR011547+79-481+
|
— |
PF00916+79-481+Sulfate_permease_family
|
— |
PTHR11814+53-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-548
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
60279.420
|
8.221
|
8.000
|
15.693
|
12.774
|
37.044
|
62.956
|
8.942
|
6.752
|
50.730
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
757.175
|
1002.612
|
1601.218
|
632.987
|
693.328
|
1276.167
|
1316.444
|
1166.889
|
131.856
|
330.132
|
245.157
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.447
|
-0.801
|
-1.231
|
— |
0.895
|
— | — |
0.315
|
— | — | — | — | — |
No JSON data available for plots.