SCN Proteipedia

Hg_chrom5_TN10mRNA_9311

Organism: Heterodera glycines Gene Locus: chr5:2644511-2645984 Feature type: polypeptide

Protein Sequence

Length: 205

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.908	1.248	0.976	0.168	1.057	2.126	0.348	1.463	1.409	1.318	0.665	2.582	1.084	0.844	0.896	1.045	1.12	0.887	1.876	0.143	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8755	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.866	0.095	0.003	0.389	0.046	0.076	0.097	0.008	0.028	0.053

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009186	1.000	1.000	Hsc_gene_5123.t1	—	—	—	KAH7730841.1 Protein T10B5.3 [Aphelenchus avenae]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.938\|GO:0005575_0.902\|GO:0110165_0.895\|GO:0009987_0.888\|GO:0005622_0.858\|GO:0065007_0.849\|GO:0050789_0.836\|GO:0003674_0.835\|GO:0016020_0.824\|GO:0050794_0.814\|GO:0043226_0.802\|GO:0005488_0.797\|GO:0043229_0.786\|GO:0005515_0.778\|GO:0008152_0.778\|GO:0044238_0.770\|GO:0044237_0.765\|GO:0009058_0.760\|GO:0043227_0.760\|GO:0043170_0.758\|GO:0032501_0.751\|GO:0044249_0.742\|GO:0032502_0.739\|GO:0019222_0.738\|GO:0009059_0.737\|GO:0043231_0.737\|GO:0031323_0.736\|GO:0006139_0.731\|GO:0010467_0.730\|GO:0060255_0.730\|GO:0080090_0.728\|GO:0009889_0.716\|GO:0031326_0.715\|GO:0010468_0.714\|GO:0010556_0.714\|GO:0090304_0.713\|GO:0034654_0.712\|GO:0141187_0.711\|GO:0016070_0.705\|GO:0032774_0.704\|GO:0051239_0.703\|GO:0019219_0.700\|GO:0006351_0.696\|GO:0051252_0.695\|GO:2001141_0.693\|GO:0006355_0.692\|GO:0050793_0.691\|GO:0019899_0.686\|GO:0006366_0.684\|GO:0006354_0.670\|GO:0006368_0.670\|GO:0019827_0.670\|GO:0032784_0.670\|GO:0034243_0.670\|GO:0098727_0.670\|GO:2000036_0.670\|GO:0140110_0.660\|GO:0000993_0.650\|GO:0001098_0.650\|GO:0001099_0.650\|GO:0003711_0.650\|GO:0043175_0.650\|GO:0070063_0.650\|GO:0005634_0.637\|GO:0043228_0.621\|GO:0043232_0.617\|GO:0031974_0.583\|GO:0043233_0.583\|GO:0070013_0.580\|GO:0031981_0.575\|GO:0005654_0.566\|GO:0005694_0.556\|GO:0000785_0.549\|GO:0005730_0.548	IPR007148+51-166+\|IPR052414+10-200+	—	PF04003+51-166+Dip2/Utp12_Family	—	PTHR44267+10-200+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-11;184-205	1.000	12-183	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.592	23332.600	5.578	-3.000	23.415	9.756	51.220	48.780	11.707	11.707	46.341

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	yellow	879.656	340.643	499.181	642.063	696.221	568.084	604.540	438.702	1358.318	1408.719	1387.119

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.322	0.778	0.471	—	-0.279	—	-0.477	0.607	—	—	—	—	—

No JSON data available for plots.

Back to Browser