SCN Proteipedia

Hg_chrom5_TN10mRNA_9313

Organism: Heterodera glycines Gene Locus: chr5:2647646-2649860 Feature type: polypeptide

Protein Sequence

Length: 368

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.695	0.885	1.087	0.843	0.77	1.254	0.712	1.766	1.027	1.469	1.07	1.119	0.679	0.784	1.497	1.009	1.158	1.029	1.881	0.32	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8757	—	—	1.333	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKKPK	—	—	—	—	—	—	0.000	—	—	0.720	0.066	0.008	0.288	0.042	0.036	0.024	0.002	0.024	0.006

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004036	2.000	1.000	Hsc_gene_25404.t1	—	—	Q5XGE2.1 U3 small nucleolar RNA-associated protein 15 homolog [Xenopus tropicalis]	KAH7723644.1 Src-associated protein SAW [Aphelenchus avenae]	No	0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.940\|GO:0005575_0.898\|GO:0110165_0.893\|GO:0009987_0.891\|GO:0005622_0.831\|GO:0016020_0.806\|GO:0043226_0.771\|GO:0043229_0.754\|GO:0043227_0.724\|GO:0043231_0.707\|GO:0003674_0.683\|GO:0065007_0.649\|GO:0050789_0.643\|GO:0005634_0.623\|GO:0050794_0.619\|GO:0043228_0.618\|GO:0043232_0.616\|GO:0005488_0.608\|GO:0008152_0.604\|GO:0044238_0.595\|GO:0031974_0.592\|GO:0043233_0.591\|GO:0070013_0.591\|GO:0031981_0.584\|GO:0044237_0.583\|GO:0043170_0.581\|GO:0009058_0.574\|GO:0044249_0.565\|GO:0048518_0.556\|GO:0071840_0.555\|GO:0009059_0.554\|GO:0005730_0.550\|GO:0048522_0.547\|GO:0010467_0.545\|GO:0019222_0.542\|GO:0006139_0.540\|GO:0031323_0.537\|GO:0060255_0.536\|GO:0034654_0.530\|GO:0080090_0.526\|GO:0090304_0.525\|GO:0009889_0.524\|GO:0141187_0.521\|GO:0031326_0.520\|GO:0016070_0.519\|GO:0010468_0.517\|GO:0010556_0.517\|GO:0009893_0.515\|GO:0032774_0.515\|GO:0031325_0.510\|GO:0097159_0.510\|GO:0010604_0.509\|GO:0009891_0.506\|GO:0019219_0.505\|GO:0031328_0.503\|GO:0010557_0.502\|GO:0044085_0.502\|GO:0051252_0.501	IPR001680+81-121_84-121_88-130_150-189_152-187_195-233+\|IPR015943+13-137_138-302+\|IPR019775+108-122+\|IPR036322+82-234+	SM00320+81-121_150-189_195-233+	PF00400+84-121_152-187+WD_domain,_G-beta_repeat	—	PTHR19924+88-330+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	239-298;368-368	2.000	1-238;299-367	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.783	41577.760	9.881	20.500	28.533	9.511	51.359	48.641	17.935	10.598	49.185

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1102.208	1741.440	1003.141	797.268	574.740	479.454	609.035	880.962	659.317	2045.406	1451.368

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.026	-1.264	-0.222	-0.504	-0.247	0.355	0.773	-0.390	—	—	—	—	8.547

No JSON data available for plots.

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