Hg_chrom5_TN10mRNA_9314
Organism: Heterodera glycines Gene Locus: chr5:2650371-2654515 Feature type: polypeptideProtein Sequence
Length: 691
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 0.976 | 1.052 | 0.798 | 1.302 | 1.15 | 0.844 | 1.23 | 1.158 | 0.9 | 0.877 | 1.277 | 1.849 | 0.668 | 1.595 | 1.199 | 0.807 | 0.877 | 1.113 | 0.213 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8758
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKPNFGGFDFFKDLCRRWR,RRKTDMLWSFLKNNRTKKT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.352
|
0.286
|
0.303
|
0.366
|
0.240
|
0.033
|
0.057
|
0.028
|
0.074
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002184
|
3.000
|
1.000
|
Hsc_gene_25405.t1
|
— | — |
Q4P5U4.2 ATP-dependent RNA helicase DBP4 [Ustilago maydis 521]
|
KAI1718347.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0005524|GO:0005759
|
GO:0005575_0.814|GO:0110165_0.811|GO:0005622_0.752|GO:0043226_0.648|GO:0043229_0.641|GO:0008150_0.632|GO:0016020_0.604|GO:0003674_0.542|GO:0043227_0.530|GO:0043231_0.514
|
IPR000629+284-292+|IPR001650+363-468_363-531_390-470+|IPR003428+590-683+|IPR011545+279-315+|IPR027417+264-317_279-468_361-467+|IPR036561+579-687_583-682+
|
SM00490+390-470+
|
PF00270+279-315+DEAD/DEAH_box_helicase|PF00271+363-468+Helicase_conserved_C-terminal_domain|PF02330+590-683+Mitochondrial_glycoprotein
|
— |
PTHR24031+277-468+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
552-691
|
1.000
|
1-551
|
2pl3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
78033.120
|
7.441
|
8.500
|
29.667
|
11.288
|
51.664
|
48.336
|
16.064
|
13.603
|
48.770
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2197.332
|
5505.275
|
3864.435
|
2647.916
|
2016.532
|
1787.894
|
1920.981
|
3050.352
|
1234.203
|
890.158
|
1037.606
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.741
|
-1.193
|
-0.436
|
-0.425
|
-0.159
|
— |
0.663
|
-0.523
|
— | — | — | — |
6.545
|
No JSON data available for plots.