Hg_chrom5_TN10mRNA_9315
Organism: Heterodera glycines Gene Locus: chr5:2650374-2654542 Feature type: polypeptideProtein Sequence
Length: 668
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 1.01 | 1.034 | 0.774 | 1.372 | 1.19 | 0.802 | 1.272 | 1.198 | 0.87 | 0.839 | 1.497 | 1.705 | 0.662 | 1.65 | 1.198 | 0.785 | 0.885 | 1.036 | 0.264 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8758
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRHANASNAKCRRWRKN,RRKTDMLWSFLKNNRTKKT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.357
|
0.274
|
0.280
|
0.377
|
0.217
|
0.030
|
0.054
|
0.028
|
0.067
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002184
|
3.000
|
1.000
|
Hsc_gene_25405.t1
|
— | — |
Q4P5U4.2 ATP-dependent RNA helicase DBP4 [Ustilago maydis 521]
|
KAI1718347.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0005524|GO:0005759
|
GO:0005575_0.815|GO:0110165_0.810|GO:0005622_0.751|GO:0043226_0.646|GO:0043229_0.637|GO:0008150_0.633|GO:0016020_0.604|GO:0003674_0.545|GO:0043227_0.524|GO:0043231_0.513
|
IPR000629+261-269+|IPR001650+340-445_340-508_367-447+|IPR003428+567-660+|IPR011545+256-292+|IPR027417+241-294_256-445_338-444+|IPR036561+556-664_560-659+
|
SM00490+367-447+
|
PF00270+256-292+DEAD/DEAH_box_helicase|PF00271+340-445+Helicase_conserved_C-terminal_domain|PF02330+567-660+Mitochondrial_glycoprotein
|
— |
PTHR24031+254-445+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
529-668
|
1.000
|
1-528
|
2pl3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
75665.410
|
7.177
|
6.500
|
30.090
|
10.928
|
52.246
|
47.754
|
16.168
|
13.922
|
48.204
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2197.332
|
5505.275
|
3864.435
|
2647.916
|
2016.532
|
1787.894
|
1920.981
|
3050.352
|
1234.203
|
890.158
|
1037.606
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.741
|
-1.193
|
-0.436
|
-0.425
|
-0.159
|
— |
0.663
|
-0.523
|
— | — | — | — |
6.545
|
No JSON data available for plots.