Hg_chrom5_TN10mRNA_9320
Organism: Heterodera glycines Gene Locus: chr5:2666995-2670771 Feature type: polypeptideProtein Sequence
Length: 745
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 1.155 | 0.83 | 1.481 | 0.805 | 0.998 | 0.751 | 1.745 | 0.537 | 1.379 | 0.468 | 1.421 | 1.529 | 1.523 | 1.698 | 1.285 | 0.594 | 0.529 | 1.342 | 0.671 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8763
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRRQKLLAKERRRLL,RKEYRMLSDEERRRFH,RRRTCIKLRQIDRKARQ,RRGAVAKRRQKLLAKERRR,RGAVAKRRQKLLAKERRRL
|
— | — | — | — |
1-27
|
0.851
|
0.993
|
0.000
|
0.000
|
0.146
|
0.100
|
0.045
|
0.286
|
0.106
|
0.179
|
0.200
|
0.161
|
0.302
|
0.750
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009187
|
1.000
|
1.000
|
Hsc_gene_5117.t1
|
Hsc_gene_5117.t1
|
— |
P34269.2 Putative tyrosinase-like protein tyr-1 [Caenorhabditis elegans]
|
KAH7700491.1 tyrosinase 4 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.895|GO:0008150_0.729|GO:0005575_0.695|GO:0110165_0.692|GO:0005488_0.620|GO:0016020_0.581|GO:0005622_0.577|GO:0009987_0.551|GO:0043226_0.525|GO:0008152_0.518|GO:0003824_0.517
|
IPR002227+221-407_237-254_266-271_367-378_387-405_388-399+|IPR003582+642-677_642-678_643-677_686-722_686-723_687-722+|IPR008922+191-456_191-463+|IPR050316+134-691+
|
SM00254+642-678_686-723+
|
PF00264+221-407+Common_central_domain_of_tyrosinase|PF01549+642-677_686-722+ShK_domain-like
|
— |
PTHR11474+134-691+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-102
|
1.000
|
103-745
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.925
|
83846.350
|
8.392
|
28.000
|
24.295
|
13.020
|
45.772
|
54.228
|
14.899
|
9.396
|
51.812
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
644.449
|
612.495
|
174.406
|
117.625
|
434.443
|
4329.881
|
103.700
|
925.563
|
46.645
|
272.686
|
175.811
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.039
|
-2.517
|
-0.461
|
1.853
|
3.332
|
-5.373
|
-2.342
|
-3.010
|
— | — | — | — | — |