Hg_chrom5_TN10mRNA_9321
Organism: Heterodera glycines Gene Locus: chr5:2672588-2675354 Feature type: polypeptideProtein Sequence
Length: 460
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.607 | 1.416 | 1.028 | 0.45 | 1.594 | 1.171 | 0.518 | 0.87 | 1.449 | 1.146 | 1.713 | 2.174 | 1.57 | 0.251 | 1.154 | 0.652 | 0.713 | 0.758 | 1.171 | 1.023 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8764
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KRTKYRSYKNRKQPK,RKQRMVRVQFWKKNRKQ,KKNRKQMQEKFGNLKRKVA
|
— | — | — | — | — |
0.588
|
0.366
|
0.000
|
— |
0.301
|
0.279
|
0.005
|
0.466
|
0.216
|
0.313
|
0.355
|
0.039
|
0.441
|
0.363
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009188
|
1.000
|
1.000
|
Hsc_gene_5114.t1
|
Hsc_gene_5114.t1
|
— | — |
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.950|GO:0005575_0.914|GO:0110165_0.913|GO:0009987_0.897|GO:0003674_0.866|GO:0016020_0.833|GO:0008152_0.798|GO:0044238_0.788|GO:0044237_0.781|GO:0043170_0.777|GO:0003824_0.748|GO:0019538_0.738|GO:0071944_0.705|GO:0005886_0.703|GO:0016740_0.702|GO:0006793_0.700|GO:0006796_0.699|GO:0043412_0.699|GO:0036211_0.695|GO:0140096_0.688|GO:0016310_0.677|GO:0006468_0.676|GO:0016772_0.673|GO:0046777_0.670|GO:0016301_0.663|GO:0016773_0.661|GO:0004672_0.659|GO:0004674_0.656|GO:0030054_0.611|GO:0005911_0.556|GO:0070161_0.556|GO:0055044_0.549|GO:0009506_0.548
|
IPR000719+52-379_60-373_61-370+|IPR011009+60-375+
|
SM00220+60-373+
|
PF00069+61-370+Protein_kinase_domain
|
— |
PTHR44167+55-447+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
452-460
|
1.000
|
1-451
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
54358.540
|
9.069
|
12.000
|
33.913
|
12.391
|
53.478
|
46.522
|
18.696
|
15.217
|
37.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
141.291
|
3.671
|
39.168
|
89.046
|
22.785
|
24.522
|
18.664
|
6.386
|
523.466
|
148.959
|
309.462
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.188
|
4.463
|
1.293
|
-2.001
|
— | — |
-2.039
|
1.691
|
— | — | — | — | — |