Hg_chrom5_TN10mRNA_9322
Organism: Heterodera glycines Gene Locus: chr5:2675644-2680150 Feature type: polypeptideProtein Sequence
Length: 216
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 1.184 | 0.505 | 0.639 | 1.466 | 1.781 | 0.11 | 1.852 | 1.132 | 1.001 | 1.122 | 1.362 | 0.514 | 0.623 | 1.512 | 1.455 | 1.366 | 0.491 | 1.068 | 0.681 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8765
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.749
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KTEEG
|
5-33
|
0.936
|
9-42
|
0.999
|
— | — |
0.000
|
— | — |
0.861
|
0.175
|
0.009
|
0.347
|
0.042
|
0.077
|
0.105
|
0.011
|
0.077
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009189
|
1.000
|
1.000
|
Hsc_gene_5113.t1
|
Hsc_gene_5113.t1
|
— |
Q11094.2 Twist-related protein [Caenorhabditis elegans]
|
PIO66419.1 Helix-loop-helix DNA-binding domain protein, partial [Teladorsagia circumcincta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.888|GO:0009987_0.777|GO:0005575_0.700|GO:0065007_0.698|GO:0110165_0.689|GO:0032501_0.688|GO:0050789_0.685|GO:0050794_0.677|GO:0005622_0.657|GO:0032502_0.654|GO:0048856_0.630|GO:0043226_0.607|GO:0043229_0.595|GO:0007275_0.578|GO:0016020_0.574|GO:0003674_0.563|GO:0005488_0.563|GO:0043227_0.509|GO:0048518_0.509|GO:0030154_0.501|GO:0048869_0.501
|
IPR011598+83-134_84-134_89-140+|IPR036638+74-138_84-147+|IPR050283+33-182+
|
SM00353+89-140+
|
PF00010+84-134+Helix-loop-helix_DNA-binding_domain
|
— |
PTHR23349+33-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-94;189-216
|
1.000
|
95-188
|
8osb_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
24788.920
|
9.628
|
11.000
|
30.093
|
9.259
|
60.648
|
39.352
|
18.519
|
11.574
|
45.370
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
58.748
|
81.514
|
91.590
|
81.507
|
37.630
|
158.227
|
54.031
|
134.043
|
23.427
|
0.000
|
10.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-1.144
|
2.084
|
-1.542
|
— |
-1.172
|
— | — | — | — | — |
No JSON data available for plots.