Hg_chrom5_TN10mRNA_9323
Organism: Heterodera glycines Gene Locus: chr5:2685730-2690695 Feature type: polypeptideProtein Sequence
Length: 544
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.748 | 0.769 | 1.003 | 0.824 | 0.613 | 1.225 | 0.416 | 1.011 | 1.225 | 1.341 | 0.696 | 1.081 | 1.174 | 1.061 | 1.538 | 1.366 | 0.994 | 1.086 | 1.555 | 1.298 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8766
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
38-78
|
0.995
|
5-74
|
0.999
|
— | — |
0.001
|
— | — |
0.081
|
0.124
|
0.021
|
0.147
|
0.190
|
0.188
|
0.286
|
0.025
|
0.808
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009190
|
1.000
|
1.000
|
Hsc_gene_5112.t2
|
Hsc_gene_5112.t1;Hsc_gene_5112.t2
|
— |
G5EBR3.1 Glutamate-gated chloride channel alpha [Caenorhabditis elegans]
|
KAI1710132.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.948|GO:0009987_0.926|GO:0005575_0.921|GO:0110165_0.921|GO:0016020_0.902|GO:0071944_0.846|GO:0005886_0.837|GO:0065007_0.816|GO:0051179_0.807|GO:0006810_0.806|GO:0051234_0.806|GO:0003674_0.792|GO:0050789_0.786|GO:0055085_0.754|GO:0006811_0.750|GO:0007154_0.750|GO:0023052_0.746|GO:0034220_0.740|GO:0005215_0.730|GO:0005216_0.730|GO:0015075_0.730|GO:0015267_0.730|GO:0022803_0.730|GO:0022857_0.730|GO:0050794_0.725|GO:0032501_0.716|GO:0030054_0.706|GO:0050896_0.697|GO:0022836_0.685|GO:0007267_0.683|GO:0045202_0.683|GO:0098916_0.674|GO:0099536_0.674|GO:0099537_0.674|GO:0007268_0.667|GO:0051716_0.648|GO:0015276_0.638|GO:0022834_0.638|GO:0007165_0.621|GO:0098660_0.619|GO:0003008_0.596|GO:0005230_0.585|GO:0065008_0.575|GO:0015318_0.571|GO:0050877_0.539|GO:0043226_0.534|GO:0006820_0.529|GO:0006821_0.529|GO:0015698_0.529|GO:0007166_0.528|GO:0098794_0.526|GO:0098656_0.519|GO:0098661_0.519|GO:1902476_0.519|GO:0042391_0.515|GO:0098590_0.510|GO:0008509_0.508|GO:0015103_0.505|GO:0015108_0.502
|
IPR006028+326-346_352-373_386-407_522-542+|IPR006029+330-447+|IPR006201+91-542_100-451_151-167_194-205_240-254_317-329+|IPR006202+98-322+|IPR007110+216-312+|IPR018000+240-254+|IPR036719+325-544+|IPR036734+97-320_98-322+|IPR038050+321-544+|IPR044721+325-413+
|
— |
PF02931+98-322+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+330-447+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000084+321-442+Glutamate-gated_chloride_channel_subunit_beta|G3DSA:2.70.170.10:FF:000038+97-320+Glutamate-gated_chloride_channel_alpha
|
PTHR18945+100-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-544
|
4tnw_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
62278.540
|
9.278
|
21.500
|
23.346
|
12.684
|
47.059
|
52.941
|
14.154
|
9.191
|
49.449
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
586.886
|
753.631
|
1410.253
|
558.063
|
195.660
|
191.553
|
138.411
|
738.764
|
199.319
|
923.264
|
613.002
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
-0.571
|
-1.228
|
-1.544
|
— |
-0.458
|
1.848
|
-2.276
|
— | — | — | — | — |
No JSON data available for plots.