SCN Proteipedia

Hg_chrom5_TN10mRNA_9324

Organism: Heterodera glycines Gene Locus: chr5:2690992-2692802 Feature type: polypeptide

Protein Sequence

Length: 274

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.764	1.358	0.531	0.755	0.608	0.936	0.739	0.547	0.892	1.332	0.664	1.503	1.825	1.263	1.639	1.147	0.658	1.217	1.123	1.288	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8767	—	—	0.889	1.000	1.000	1.000	1.000	—	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	SKRRRRERPF,RRRSGCSSSKRRRRERP,KRRRRERPFAVFGRAMRR,RRRRERPFAVFGRAMRRLR,RRRERPFAVFGRAMRRLRH	—	—	—	—	—	—	0.000	—	—	0.069	0.119	0.026	0.137	0.110	0.164	0.217	0.029	0.839	0.046

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009191	1.000	1.000	Hsc_gene_5111.t1	—	—	Q94900.2 Glutamate-gated chloride channel [Drosophila melanogaster]	KAH7701364.1 CBR-AVR-14 protein, partial [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.898\|GO:0005575_0.866\|GO:0009987_0.858\|GO:0110165_0.848\|GO:0016020_0.778\|GO:0003674_0.719\|GO:0065007_0.698\|GO:0050789_0.681\|GO:0071944_0.653\|GO:0005886_0.635\|GO:0051179_0.627\|GO:0006810_0.621\|GO:0051234_0.621\|GO:0050794_0.610\|GO:0032501_0.599\|GO:0050896_0.599\|GO:0007154_0.593\|GO:0023052_0.589\|GO:0055085_0.566\|GO:0006811_0.551\|GO:0007267_0.545\|GO:0034220_0.544\|GO:0007268_0.537\|GO:0030054_0.537\|GO:0045202_0.537\|GO:0098916_0.537\|GO:0099536_0.537\|GO:0099537_0.537\|GO:0005215_0.529\|GO:0022857_0.529\|GO:0015075_0.517\|GO:0022803_0.517\|GO:0051716_0.517\|GO:0015267_0.516\|GO:0005216_0.515\|GO:0022836_0.513\|GO:0015276_0.509\|GO:0022834_0.509\|GO:0005230_0.506	IPR006028+9-29_35-56_69-90_237-257+\|IPR006029+13-252+\|IPR006201+2-158+\|IPR036719+7-260+\|IPR038050+1-269+	—	PF02932+13-252+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:1.20.58.390:FF:000084+4-117+Glutamate-gated_chloride_channel_subunit_beta	PTHR18945+2-158+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	130-175	2.000	1-129;176-274	4tnw_T	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.829	31118.060	10.193	17.500	20.073	13.504	41.606	58.394	13.504	6.569	50.365

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	225.464	186.787	438.133	174.919	53.398	91.452	32.890	222.287	34.176	510.825	306.547

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.001	-0.232	-1.217	-1.740	0.788	-1.464	1.178	-2.614	-4.032	—	—	—	4.924

No JSON data available for plots.

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