Hg_chrom5_TN10mRNA_9325
Organism: Heterodera glycines Gene Locus: chr5:2693275-2696498 Feature type: polypeptideProtein Sequence
Length: 476
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.808 | 0.611 | 1.666 | 1.12 | 1.131 | 0.5 | 0.63 | 1.634 | 0.937 | 1.114 | 0.989 | 1.459 | 0.646 | 1.543 | 1.14 | 0.758 | 0.732 | 0.162 | 0.927 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8768
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKKLKK,EKRKKKKPEEKGVRP,RRTCSFRQRPQEIEEKRKK
|
— | — | — | — | — |
0.502
|
0.319
|
0.000
|
— |
0.493
|
0.171
|
0.009
|
0.548
|
0.111
|
0.223
|
0.117
|
0.032
|
0.192
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009192
|
1.000
|
1.000
|
Hsc_gene_5110.t1
|
Hsc_gene_5110.t1
|
— |
Q7ZYI3.1 Protein Mdm4 [Xenopus laevis]
|
CAB9515900.1 IAP repeat-containing protein 3 [Seminavis robusta]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.739|GO:0009987_0.682|GO:0005575_0.675|GO:0110165_0.670|GO:0003674_0.666|GO:0065007_0.562|GO:0005622_0.544|GO:0050789_0.543|GO:0050794_0.526|GO:0016020_0.511
|
IPR001841+353-391_353-392_426-464_426-465+|IPR013083+323-404_410-476+
|
SM00184+353-391_426-464+
|
PF13920+352-397_424-471+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR46858+289-396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-476
|
3eb6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
54190.160
|
9.224
|
26.000
|
26.261
|
9.874
|
51.050
|
48.950
|
16.176
|
10.084
|
48.109
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
554.072
|
8.719
|
203.315
|
117.432
|
9.438
|
2.280
|
3.452
|
7.212
|
2297.725
|
568.826
|
1309.783
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.314
|
3.615
|
-0.682
|
-3.672
|
-2.037
|
— | — | — | — |
-4.134
|
-5.768
|
— | — |