Hg_chrom5_TN10mRNA_9326
Organism: Heterodera glycines Gene Locus: chr5:2711037-2722132 Feature type: polypeptideProtein Sequence
Length: 1,980
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.198 | 1.045 | 0.588 | 0.94 | 1.044 | 1.787 | 0.872 | 1.742 | 0.797 | 0.826 | 0.65 | 1.396 | 0.73 | 0.942 | 1.227 | 1.955 | 1.018 | 0.597 | 0.35 | 0.297 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8769
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRQK,KKAHAVTEVLRSKRA,RRERHGSNGKNAKIGGKGS
|
— | — |
18-78
|
0.999
|
— | — |
0.000
|
— | — |
0.203
|
0.172
|
0.039
|
0.677
|
0.206
|
0.200
|
0.225
|
0.061
|
0.526
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004038
|
1.000
|
2.000
|
Hsc_gene_5109.t1;Hsc_gene_5109.t2
|
— | — |
Q8R0J1.2 Pleckstrin homology domain-containing family G member 6 [Mus musculus]
|
KAI1712552.1 rhoGEF domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085
|
GO:0008150_0.973|GO:0009987_0.910|GO:0065007_0.894|GO:0005575_0.876|GO:0110165_0.867|GO:0050789_0.852|GO:0005622_0.812|GO:0003674_0.744|GO:0005488_0.744|GO:0050794_0.742|GO:0005515_0.659|GO:0005737_0.653|GO:0050896_0.612|GO:0043226_0.599|GO:0051716_0.582|GO:0016020_0.571|GO:0043229_0.560
|
IPR000219+720-911_724-905_724-910+|IPR001849+994-1097+|IPR011993+990-1112+|IPR035899+701-930_714-931+|IPR040181+686-1877+
|
SM00233+994-1097+|SM00325+724-910+
|
PF00621+724-905+RhoGEF_domain
|
— |
PTHR13217+686-1877+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-135;195-654;1316-1980
|
2.000
|
136-194;655-1315
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.924
|
212189.290
|
8.138
|
50.500
|
23.283
|
7.576
|
54.646
|
45.354
|
13.788
|
9.495
|
56.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1992.139
|
1377.481
|
1048.334
|
2001.948
|
3921.040
|
5647.378
|
2315.439
|
1058.842
|
514.681
|
1815.674
|
1258.105
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.623
|
0.402
|
1.042
|
0.938
|
0.542
|
-1.277
|
-2.526
|
1.273
|
-1.930
|
— | — | — | — |
No JSON data available for plots.