Hg_chrom5_TN10mRNA_9328
Organism: Heterodera glycines Gene Locus: chr5:2729960-2731541 Feature type: polypeptideProtein Sequence
Length: 165
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 0.564 | 0.882 | 0.627 | 1.111 | 1.088 | 0.938 | 0.909 | 2.29 | 0.901 | 1.561 | 1.07 | 0.168 | 1.399 | 1.237 | 0.606 | 0.894 | 1.377 | 0.466 | 0.178 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8771
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.396
|
0.401
|
0.085
|
0.721
|
0.088
|
0.155
|
0.074
|
0.189
|
0.091
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P61865.1 Large ribosomal subunit protein uL11 [Caenorhabditis briggsae]
|
KAH7723287.1 CRE-RPL-12 protein [Aphelenchus avenae]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.851|GO:0110165_0.840|GO:0005622_0.808|GO:0043226_0.718|GO:0005737_0.708|GO:0043229_0.708|GO:0005829_0.609|GO:0043228_0.597|GO:0043232_0.597|GO:0032991_0.541|GO:0016020_0.508
|
IPR000911+1-153_9-145_13-143_13-144+|IPR020783+74-143+|IPR020784+13-67+|IPR020785+130-145+|IPR036769+75-148_81-163+|IPR036796+1-80_1-85+
|
SM00649+13-144+
|
PF00298+74-143+Ribosomal_protein_L11,_RNA_binding_domain|PF03946+13-67+Ribosomal_protein_L11,_N-terminal_domain
|
G3DSA:1.10.10.250:FF:000002+81-163+60S_ribosomal_protein_L12|G3DSA:3.30.1550.10:FF:000002+1-80+60S_ribosomal_protein_L12
|
PTHR11661+1-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-165
|
9qqb_Bt
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
17999.110
|
10.206
|
9.500
|
29.697
|
3.636
|
46.061
|
53.939
|
18.182
|
11.515
|
50.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
7464.176
|
1977.932
|
3519.500
|
9624.319
|
10047.809
|
7712.940
|
5732.777
|
3816.189
|
9806.750
|
9388.908
|
9567.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
2.146
|
1.560
|
— |
-0.366
|
-0.417
|
-1.121
|
0.732
|
— | — | — | — | — |
No JSON data available for plots.