Hg_chrom5_TN10mRNA_9329
Organism: Heterodera glycines Gene Locus: chr5:2733835-2736188 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.652 | 1.166 | 1.448 | 0.814 | 0.983 | 1.135 | 0.737 | 0.59 | 1.377 | 1.036 | 0.894 | 1.041 | 1.803 | 0.624 | 1.144 | 1.222 | 1.016 | 0.76 | 1.361 | 0.868 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8772
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKQKKGKAKRREKTVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.955
|
0.028
|
0.035
|
0.151
|
0.017
|
0.057
|
0.013
|
0.002
|
0.016
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q9ZV43.1 Protein CHROMATIN REMODELING 8 [Arabidopsis thaliana]
|
MPC43682.1 DNA excision repair protein ERCC-6 [Portunus trituberculatus]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.922|GO:0009987_0.766|GO:0005575_0.762|GO:0110165_0.762|GO:0005622_0.679|GO:0016020_0.678|GO:0008152_0.614|GO:0043226_0.613|GO:0043229_0.604|GO:0043170_0.595|GO:0065007_0.591|GO:0044238_0.578|GO:0043227_0.575|GO:0050789_0.573|GO:0043231_0.565|GO:0006139_0.530|GO:0090304_0.518|GO:0003674_0.514
|
IPR001650+212-339_232-321_238-321+|IPR027417+172-335_227-337+|IPR049730+234-332+|IPR050496+56-159+
|
SM00490+238-321+
|
PF00271+232-321+Helicase_conserved_C-terminal_domain
|
— |
PTHR45629+56-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-90
|
1.000
|
91-339
|
8he5_O
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
38517.330
|
5.015
|
-6.000
|
26.549
|
12.389
|
50.737
|
49.263
|
12.684
|
13.864
|
50.147
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
773.962
|
900.259
|
1022.721
|
869.533
|
591.162
|
578.381
|
411.482
|
970.626
|
745.427
|
822.954
|
789.728
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.187
|
-0.125
|
-0.589
|
— |
-0.482
|
0.640
|
-1.096
|
— | — | — | — | — |
No JSON data available for plots.