Hg_chrom5_TN10mRNA_9332
Organism: Heterodera glycines Gene Locus: chr5:2755114-2768563 Feature type: polypeptideProtein Sequence
Length: 2,139
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.56 | 1.435 | 0.859 | 0.451 | 1.893 | 1.175 | 0.49 | 1.052 | 1.465 | 1.32 | 1.764 | 1.458 | 1.831 | 0.351 | 0.925 | 0.855 | 0.628 | 0.574 | 1.223 | 0.646 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8775
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRKL,KKASEQMQKIKERKE,KKYDEKKGTRKVKGKAK,KKEQQNEIEKAMKSIRK,RRDLAWEKARRKHRTKKE,RRIKKDFEEFEKIIKPKKS,RKIIEKAQKKYDEKKGTRK,KKEEAKLNAKKKKQKRKKS
|
— | — | — | — |
1-25
|
0.927
|
1.000
|
0.000
|
0.000
|
0.543
|
0.233
|
0.006
|
0.534
|
0.117
|
0.112
|
0.105
|
0.022
|
0.134
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009193
|
2.000
|
0.000
|
0.000
|
Hsc_gene_5595.t1
|
— |
Q61183.4 Poly(A) polymerase alpha [Mus musculus]
|
XP_058825257.1 poly(A) polymerase type 3 isoform X2 [Topomyia yanbarensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.749|GO:0110165_0.745|GO:0005622_0.727|GO:0043226_0.710|GO:0016020_0.696|GO:0043229_0.686|GO:0043227_0.634|GO:0003674_0.622|GO:0008150_0.609|GO:0043231_0.590
|
IPR007012+1829-1988+
|
— |
PF04928+1829-1988+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1820-2137+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1128-1339
|
2.000
|
1-1127;1340-2139
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
251667.340
|
7.694
|
24.500
|
34.362
|
12.482
|
54.932
|
45.068
|
18.280
|
16.082
|
36.559
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1328.134
|
26.467
|
195.836
|
143.008
|
52.905
|
21.271
|
13.168
|
14.860
|
1864.886
|
4236.603
|
3220.153
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.656
|
2.296
|
-0.344
|
-1.466
|
-1.300
|
— | — | — | — |
-3.512
|
-6.070
|
— | — |