Hg_chrom5_TN10mRNA_9336
Organism: Heterodera glycines Gene Locus: chr5:2774211-2778892 Feature type: polypeptideProtein Sequence
Length: 550
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.613 | 0.93 | 1.091 | 0.251 | 0.788 | 0.839 | 0.801 | 2.091 | 1.535 | 1.425 | 0.689 | 2.032 | 1.01 | 0.804 | 1.744 | 0.987 | 0.924 | 0.799 | 1.538 | 1.016 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8778
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRQKSG
|
18-58
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.071
|
0.076
|
0.007
|
0.117
|
0.500
|
0.342
|
0.471
|
0.003
|
0.699
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004033
|
2.000
|
1.000
|
Hsc_gene_5128.t1
|
— | — |
Q23369.1 Bestrophin homolog 22 [Caenorhabditis elegans]
|
KAI1714304.1 bestrophin, RFP-TM, chloride channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005254
|
GO:0008150_0.962|GO:0009987_0.928|GO:0003674_0.894|GO:0051179_0.824|GO:0006810_0.813|GO:0051234_0.813|GO:0055085_0.724|GO:0006811_0.723|GO:0005575_0.702|GO:0110165_0.698|GO:0005215_0.688|GO:0022803_0.688|GO:0022857_0.688|GO:0015267_0.686|GO:0016020_0.657|GO:0034220_0.617|GO:0005216_0.589|GO:0015075_0.589|GO:0022836_0.586|GO:0006820_0.576|GO:0098656_0.575|GO:0022834_0.574|GO:0008509_0.559|GO:0005253_0.558|GO:0071944_0.536|GO:0005886_0.524|GO:0098660_0.511
|
IPR000615+1-458+|IPR021134+9-317+
|
— |
PF01062+9-317+Bestrophin,_RFP-TM,_chloride_channel
|
— |
PTHR10736+1-458+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
365-550
|
1.000
|
1-364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
63273.690
|
9.766
|
24.500
|
28.000
|
13.273
|
47.818
|
52.182
|
17.273
|
10.727
|
44.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1139.152
|
369.226
|
2697.076
|
667.556
|
193.218
|
1343.676
|
365.614
|
4748.093
|
620.959
|
623.899
|
622.639
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.641
|
0.717
|
-1.907
|
-1.821
|
2.812
|
-1.867
|
1.729
|
-3.561
|
— | — | — | — | — |
No JSON data available for plots.