Hg_chrom5_TN10mRNA_9338
Organism: Heterodera glycines Gene Locus: chr5:2782712-2784360 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.879 | 1.622 | 0.529 | 0.0 | 1.066 | 1.64 | 0.692 | 1.453 | 1.421 | 1.1 | 1.057 | 0.684 | 1.453 | 1.789 | 0.831 | 0.914 | 0.381 | 1.233 | 0.894 | 0.513 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8780
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.597
|
0.246
|
0.099
|
0.603
|
0.182
|
0.117
|
0.033
|
0.048
|
0.198
|
0.195
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001697
|
3.000
|
1.000
|
Hsc_gene_4456.t1
|
— | — |
Q656A5.1 Protein MOTHER of FT and TFL1 homolog 1 [Oryza sativa Japonica Group]
|
KAH7697928.1 phosphatidyl-ethanolamine-binding protein [Aphelenchus avenae];KAH7728383.1 phosphatidyl-ethanolamine-binding protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.723|GO:0110165_0.715|GO:0008150_0.674|GO:0005622_0.610|GO:0016020_0.599|GO:0043226_0.595|GO:0043227_0.567|GO:0043229_0.545|GO:0005737_0.519|GO:0043231_0.515
|
IPR008914+50-164+|IPR035810+4-170_25-167+|IPR036610+1-172_7-171+
|
— |
PF01161+50-164+Phosphatidylethanolamine-binding_protein
|
— |
PTHR11362+4-170+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-172
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
19185.980
|
9.774
|
5.500
|
23.256
|
11.047
|
45.349
|
54.651
|
13.953
|
9.302
|
49.419
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
645.141
|
37.264
|
1147.446
|
182.879
|
77.613
|
389.883
|
48.226
|
4479.586
|
148.621
|
324.941
|
249.375
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.715
|
2.157
|
-2.541
|
-1.268
|
2.341
|
-3.003
|
3.419
|
-6.394
|
— | — | — | — | — |
No JSON data available for plots.