Hg_chrom5_TN10mRNA_9340
Organism: Heterodera glycines Gene Locus: chr5:2787170-2792627 Feature type: polypeptideProtein Sequence
Length: 936
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.317 | 0.894 | 0.405 | 1.104 | 1.068 | 0.623 | 1.229 | 1.235 | 1.285 | 0.648 | 1.76 | 1.276 | 1.171 | 1.548 | 0.962 | 0.683 | 0.826 | 1.89 | 1.037 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8782
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.877
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KRPRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.218
|
0.014
|
0.005
|
0.244
|
0.258
|
0.646
|
0.643
|
0.010
|
0.689
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001311
|
3.000
|
2.000
|
Hsc_gene_19818.t1;Hsc_gene_19844.t1
|
— | — |
P91406.2 Glutamate carboxypeptidase 2 homolog [Caenorhabditis elegans]
|
KAI1724302.1 peptidase family m28 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.798|GO:0005575_0.764|GO:0110165_0.759|GO:0016020_0.682|GO:0071944_0.602|GO:0005886_0.589|GO:0003674_0.555|GO:0009987_0.542
|
IPR003137+347-429+|IPR007365+806-914+|IPR007484+526-727+|IPR036757+765-932_766-934+|IPR039373+177-890+|IPR046450+327-526+
|
— |
PF02225+347-429+PA_domain|PF04253+806-914+Transferrin_receptor-like_dimerisation_domain|PF04389+526-727+Peptidase_family_M28
|
G3DSA:3.40.630.10:FF:000101+508-765+N-acetylated_alpha-linked_acidic_dipeptidase_like_1
|
PTHR10404+177-890+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-936
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
107857.100
|
7.998
|
14.500
|
25.855
|
13.034
|
46.581
|
53.419
|
14.316
|
11.538
|
46.261
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
609.934
|
222.231
|
995.492
|
293.431
|
409.783
|
504.161
|
1011.924
|
632.040
|
861.442
|
496.482
|
652.894
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.936
|
0.264
|
-1.655
|
0.450
|
0.314
|
1.015
|
— |
0.824
|
— | — | — | — | — |
No JSON data available for plots.