Hg_chrom5_TN10mRNA_9341
Organism: Heterodera glycines Gene Locus: chr5:2797078-2799726 Feature type: polypeptideProtein Sequence
Length: 455
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.69 | 1.636 | 0.599 | 0.531 | 1.245 | 0.845 | 0.759 | 0.769 | 1.709 | 1.277 | 1.432 | 1.81 | 1.648 | 0.634 | 0.807 | 0.722 | 0.721 | 0.899 | 0.676 | 1.293 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8783
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
mitochondrion
|
nucleus
|
PPDKRKH,KRKHLITMVDAGKLKKQNK
|
— | — | — | — |
1-21
|
0.991
|
0.999
|
0.000
|
0.000
|
0.354
|
0.437
|
0.013
|
0.344
|
0.315
|
0.226
|
0.311
|
0.018
|
0.191
|
0.312
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001296
|
4.000
|
1.000
|
Hsc_gene_15678.t1
|
— | — |
P43298.1 Receptor protein kinase TMK1 [Arabidopsis thaliana]
|
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
WP_224195915
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.881|GO:0009987_0.795|GO:0005575_0.790|GO:0110165_0.773|GO:0003674_0.746|GO:0005622_0.628|GO:0065007_0.616|GO:0050789_0.596|GO:0003824_0.582|GO:0005737_0.556|GO:0016740_0.524|GO:0050794_0.515|GO:0016020_0.512|GO:0140096_0.506
|
IPR000719+51-359_59-359_60-352+|IPR011009+60-366+
|
SM00220+59-359+
|
PF00069+60-352+Protein_kinase_domain
|
— |
PTHR44167+60-352+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-455
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
52089.510
|
9.384
|
15.500
|
25.714
|
12.747
|
45.495
|
54.505
|
14.945
|
10.769
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
123.403
|
0.859
|
4.870
|
215.780
|
77.709
|
6.809
|
7.089
|
9.063
|
3.792
|
416.226
|
239.469
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.282
|
7.845
|
5.592
|
-1.502
|
-3.502
|
— | — | — |
-6.917
|
6.070
|
— | — | — |