SCN Proteipedia

Hg_chrom5_TN10mRNA_9342

Organism: Heterodera glycines Gene Locus: chr5:2801077-2812395 Feature type: polypeptide

Protein Sequence

Length: 1,811

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.303	0.899	1.024	0.514	1.546	1.557	0.631	1.353	0.969	1.492	0.77	1.397	0.966	0.435	1.251	0.773	0.552	0.92	1.402	0.893	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8784	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.409	0.175	0.022	0.557	0.150	0.393	0.204	0.012	0.243	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	Q22830.4 Intraflagellar transport protein osm-1 [Caenorhabditis elegans]	KAI1724366.1 intraflagellar transport protein osm-1 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.883\|GO:0009987_0.824\|GO:0005575_0.815\|GO:0110165_0.814\|GO:0005622_0.736\|GO:0016020_0.720\|GO:0071944_0.688\|GO:0043226_0.669\|GO:0005886_0.668\|GO:0043227_0.617\|GO:0051179_0.589\|GO:0016043_0.584\|GO:0071840_0.584\|GO:0006810_0.578\|GO:0051234_0.578\|GO:0032991_0.556\|GO:0051641_0.538\|GO:0006996_0.531\|GO:0044085_0.522\|GO:0030030_0.518\|GO:0120036_0.518\|GO:0033036_0.517\|GO:0051649_0.517\|GO:0070727_0.517\|GO:0098590_0.515\|GO:0008104_0.514\|GO:0022607_0.513\|GO:0046907_0.511\|GO:0016192_0.510\|GO:0007010_0.508\|GO:0007017_0.505\|GO:0042995_0.505\|GO:0120025_0.504\|GO:0007018_0.502\|GO:0000226_0.501\|GO:0030031_0.501\|GO:0048193_0.501\|GO:0051640_0.501\|GO:0051656_0.501\|GO:0070925_0.501	IPR001680+2-44_55-94_142-180_147-180_275-310+\|IPR011990+862-1011+\|IPR015943+6-137_138-382+\|IPR036322+21-304_252-599+	SM00320+2-44_55-94_142-180_275-310+	PF00400+147-180+WD_domain,_G-beta_repeat	—	PTHR15722+1-1728+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1811	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.748	205261.610	5.130	-42.500	28.824	11.044	47.543	52.457	13.915	14.909	44.616

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	3116.669	1452.458	1236.699	456.114	123.898	104.270	186.322	306.930	488.555	11818.999	6963.095

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.462	-1.808	-1.330	-1.913	—	0.847	1.454	-0.579	-4.709	—	-6.065	—	—

No JSON data available for plots.

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