Hg_chrom5_TN10mRNA_9344
Organism: Heterodera glycines Gene Locus: chr5:2816973-2828557 Feature type: polypeptideProtein Sequence
Length: 2,472
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.607 | 1.477 | 0.794 | 0.516 | 2.002 | 1.193 | 0.491 | 1.032 | 1.492 | 1.328 | 1.808 | 1.642 | 1.596 | 0.319 | 0.875 | 0.74 | 0.663 | 0.595 | 1.276 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8786
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRKL,KRRS,KKASEQMQKIKERKE,KKYDEKKGTRKVKGKAK,KKEQQNEIEKAMKSIRK,RRDLAWEKARRKHRTKKE,RKIIEKAQKKYDEKKGTRK
|
— | — | — | — | — | — |
0.482
|
— | — |
0.479
|
0.286
|
0.014
|
0.579
|
0.133
|
0.093
|
0.065
|
0.037
|
0.172
|
0.312
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004039
|
1.000
|
2.000
|
Hsc_gene_19789.t1;Hsc_gene_19789.t2
|
Hsc_gene_5595.t1
|
— |
Q61183.4 Poly(A) polymerase alpha [Mus musculus]
|
XP_058825257.1 poly(A) polymerase type 3 isoform X2 [Topomyia yanbarensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.760|GO:0110165_0.755|GO:0005622_0.735|GO:0043226_0.696|GO:0016020_0.691|GO:0043229_0.675|GO:0043227_0.627|GO:0043231_0.609|GO:0003674_0.599|GO:0008150_0.563
|
IPR007012+2162-2321+
|
— |
PF04928+2162-2321+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+2153-2469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
38-94;696-845;1545-1634
|
4.000
|
1-37;95-695;846-1544;1635-2472
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
290165.160
|
7.323
|
21.500
|
34.668
|
11.408
|
54.895
|
45.105
|
18.285
|
16.383
|
36.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1206.793
|
18.003
|
386.584
|
248.993
|
75.381
|
13.296
|
13.588
|
28.689
|
3408.152
|
2429.403
|
2848.867
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.192
|
3.650
|
-0.526
|
-1.757
|
-2.489
|
— |
0.998
|
-0.934
|
— |
-3.578
|
-4.899
|
— | — |
No JSON data available for plots.