Hg_chrom5_TN10mRNA_9347
Organism: Heterodera glycines Gene Locus: chr5:2834153-2836305 Feature type: polypeptideProtein Sequence
Length: 198
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 0.47 | 1.561 | 2.09 | 1.263 | 0.648 | 0.722 | 0.758 | 0.561 | 1.297 | 1.148 | 1.485 | 2.104 | 0.777 | 2.371 | 1.154 | 0.331 | 0.536 | 0.0 | 0.297 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8788
|
— | — |
1.556
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
chloroplast
|
RRRRRRRRRKKKEMKKKND,KRHSSKGAEKRDEERRRRRRRRRKKKEMKKK
|
— | — |
43-83
|
0.999
|
1-30
|
0.836
|
0.980
|
0.000
|
0.000
|
0.523
|
0.058
|
0.014
|
0.519
|
0.037
|
0.020
|
0.042
|
0.001
|
0.146
|
0.284
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002185
|
3.000
|
1.000
|
Hsc_gene_16006.t1
|
Hsc_gene_16006.t1
|
— | — | — |
MCX6117508
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
151-198
|
1.000
|
1-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
22813.150
|
8.364
|
7.500
|
36.869
|
10.101
|
51.515
|
48.485
|
20.707
|
16.162
|
45.960
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
6.722
|
1.091
|
5.012
|
3.756
|
0.804
|
1.143
|
2.831
|
7.986
|
19.350
|
6.411
|
11.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.983
|
— | — |
-2.236
|
— | — |
2.706
|
-1.355
|
— | — | — | — | — |