Hg_chrom5_TN10mRNA_9352
Organism: Heterodera glycines Gene Locus: chr5:2847916-2852654 Feature type: polypeptideProtein Sequence
Length: 706
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.626 | 1.12 | 1.082 | 0.781 | 0.803 | 0.763 | 0.995 | 2.408 | 1.165 | 1.129 | 0.515 | 2.0 | 1.456 | 1.171 | 1.127 | 0.85 | 0.813 | 0.966 | 2.506 | 0.833 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8793
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.634
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-22
|
0.643
|
0.796
|
0.000
|
0.000
|
0.325
|
0.084
|
0.042
|
0.352
|
0.423
|
0.187
|
0.198
|
0.045
|
0.243
|
0.335
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009199
|
1.000
|
1.000
|
Hsc_gene_19802.t1
|
Hsc_gene_19802.t1
|
— |
Q5N9W4.1 Putative laccase-5 [Oryza sativa Japonica Group]
|
WXH83139.1 laccase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005507|GO:0016491
|
GO:0008150_0.807|GO:0005575_0.601|GO:0110165_0.594|GO:0003674_0.514
|
IPR001117+289-373+|IPR008972+67-202_92-234_221-373_221-441_487-706_547-703+|IPR011706+547-689+|IPR011707+97-204+|IPR045087+91-684+
|
— |
PF00394+289-373+Multicopper_oxidase|PF07731+547-689+Multicopper_oxidase|PF07732+97-204+Multicopper_oxidase
|
— |
PTHR11709+91-684+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
701-706
|
1.000
|
1-700
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
80196.330
|
6.695
|
4.000
|
24.504
|
16.147
|
43.201
|
56.799
|
13.739
|
10.765
|
50.142
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
red
|
343.545
|
15.205
|
583.506
|
449.652
|
492.596
|
283.505
|
246.704
|
1168.669
|
20.492
|
272.700
|
164.611
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.039
|
4.753
|
-0.269
|
— |
-0.782
|
— |
1.944
|
-2.105
|
-3.847
|
4.673
|
— | — | — |