Hg_chrom5_TN10mRNA_9353
Organism: Heterodera glycines Gene Locus: chr5:2854367-2860595 Feature type: polypeptideProtein Sequence
Length: 1,376
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.724 | 0.766 | 0.251 | 1.005 | 1.36 | 0.683 | 1.381 | 1.114 | 2.19 | 0.562 | 1.111 | 1.453 | 0.699 | 1.513 | 1.267 | 0.667 | 0.496 | 1.118 | 0.235 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RRINGAKGQKRGRRRTF,RRRTFWAFWHFGHSFGRRR,RRTFWAFWHFGHSFGRRRQ
|
— | — | — | — |
1-25
|
0.985
|
0.999
|
0.000
|
0.000
|
0.279
|
0.364
|
0.032
|
0.363
|
0.125
|
0.082
|
0.156
|
0.055
|
0.480
|
0.634
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009200
|
1.000
|
1.000
|
Hsc_gene_19803.t1
|
Hsc_gene_1411.t1;Hsc_gene_19803.t1;Hsc_gene_19804.t1
|
— |
A8WHP9.1 Leucine-rich repeat-containing protein 3 [Danio rerio]
|
KAI1731045.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
-0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.856|GO:0110165_0.850|GO:0008150_0.770|GO:0009987_0.688|GO:0016020_0.616|GO:0071944_0.600|GO:0003674_0.547|GO:0005622_0.534|GO:0050896_0.504|GO:0065007_0.501
|
IPR001611+131-192_204-265_205-226_231-252_254-275_328-383_372-393_445-491_469-490_501-560_526-547_574-623_648-669_672-731_720-740_768-827_888-946_936-957_983-1002_983-1004_1006-1063+|IPR003591+155-177_180-202_203-226_229-252_253-275_276-297_298-320_322-345_346-369_370-393_396-417_418-441_444-466_467-490_499-523_524-547_548-571_572-595_596-619_623-645_646-669_670-693_694-717_718-741_744-767_768-789_790-813_815-837_839-861_863-884_910-933_934-957_981-1004_1005-1028_1029-1053_1131-1154+|IPR025875+625-663+|IPR032675+116-273_274-353_354-498_499-622_623-750_751-884_885-957_958-1265+|IPR050328+746-878+
|
SM00364+252-271_274-293_395-414_499-518_548-567_646-665_718-736_981-1000_1005-1024+|SM00365+203-224_229-255_274-300_467-496_499-517_524-550_572-593_646-664_670-696_718-738_744-765_766-792_910-928_934-960+|SM00369+155-177_180-202_203-226_229-252_253-275_276-297_298-320_322-345_346-369_370-393_396-417_418-441_444-466_467-490_499-523_524-547_548-571_572-595_596-619_623-645_646-669_670-693_694-717_718-741_744-767_768-789_790-813_815-837_839-861_863-884_910-933_934-957_981-1004_1005-1028_1029-1053_1131-1154+
|
PF00560+983-1002+Leucine_Rich_Repeat|PF12799+625-663+Leucine_Rich_repeats_(2_copies)|PF13855+131-192_204-265_328-383_445-491_501-560_574-623_672-731_768-827_888-946_1006-1063+Leucine_rich_repeat
|
G3DSA:3.80.10.10:FF:001164+226-396_497-657+GH01279p
|
PTHR24373+746-878+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1373-1376
|
1.000
|
1-1372
|
4u09_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
155904.200
|
9.226
|
31.000
|
24.128
|
10.247
|
49.782
|
50.218
|
13.881
|
10.247
|
44.186
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
682.479
|
1067.579
|
731.545
|
405.904
|
146.141
|
166.981
|
188.023
|
1413.580
|
164.585
|
1317.499
|
823.393
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.774
|
-1.532
|
-0.742
|
-1.504
|
— | — |
2.979
|
-2.769
|
— | — | — | — | — |