Hg_chrom5_TN10mRNA_9357
Organism: Heterodera glycines Gene Locus: chr5:2873254-2875382 Feature type: polypeptideProtein Sequence
Length: 388
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 0.839 | 0.937 | 0.355 | 1.546 | 0.529 | 0.491 | 1.289 | 0.974 | 0.662 | 1.328 | 2.122 | 1.36 | 0.793 | 1.788 | 1.583 | 0.845 | 0.742 | 1.388 | 0.682 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8798
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKAEEQNLKKGAKR,RRKATNVGWATEWKRRPSK,RKATNVGWATEWKRRPSKK,KRRPSKKRKSLSKSPLRQKGARKSAEREGKRSKP
|
40-60
|
0.994
|
24-55
|
0.991
|
— | — |
0.000
|
— | — |
0.916
|
0.071
|
0.019
|
0.150
|
0.036
|
0.010
|
0.028
|
0.019
|
0.018
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009202
|
1.000
|
1.000
|
Hsc_gene_19809.t1
|
Hsc_gene_19809.t1;Hsc_gene_19809.t2
|
— | — | — |
WP_189570289
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.932|GO:0005575_0.918|GO:0110165_0.910|GO:0005622_0.897|GO:0043226_0.855|GO:0016020_0.841|GO:0043229_0.839|GO:0043227_0.787|GO:0043231_0.764|GO:0005634_0.720|GO:0009987_0.538|GO:0003674_0.516|GO:0065007_0.510|GO:0005737_0.504
|
IPR000504+25-115_26-104_27-85_191-254_192-258_193-250+|IPR012677+2-94_161-317+|IPR035979+23-250+
|
SM00360+26-104_192-258+
|
PF00076+27-85_193-250+RNA_recognition_motif
|
— |
PTHR24012+15-118+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;136-182;277-388
|
2.000
|
14-135;183-276
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
44699.540
|
9.884
|
17.000
|
34.536
|
11.598
|
56.443
|
43.557
|
20.103
|
14.433
|
46.649
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
654.862
|
464.530
|
874.598
|
713.536
|
718.260
|
1195.104
|
838.628
|
1765.796
|
236.938
|
223.397
|
229.200
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
0.482
|
-0.185
|
— |
0.749
|
-0.501
|
0.461
|
-0.933
|
— | — | — | — | — |
No JSON data available for plots.