Hg_chrom5_TN10mRNA_9358
Organism: Heterodera glycines Gene Locus: chr5:2875979-2878059 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.814 | 0.42 | 0.575 | 1.09 | 0.489 | 0.695 | 1.156 | 0.564 | 1.856 | 1.83 | 0.479 | 1.859 | 2.571 | 0.478 | 0.507 | 1.29 | 0.814 | 1.129 | 1.389 | 0.797 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8799
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
40-65
|
0.924
|
— | — | — | — |
0.000
|
— | — |
0.073
|
0.103
|
0.004
|
0.136
|
0.472
|
0.627
|
0.425
|
0.011
|
0.671
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009203
|
1.000
|
1.000
|
Hsc_gene_19849.t1
|
Hsc_gene_19849.t1
|
— |
Q6NT16.1 MFS-type transporter SLC18B1 [Homo sapiens]
|
KAI1716240.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0005575_0.915|GO:0110165_0.910|GO:0008150_0.742|GO:0071944_0.731|GO:0005886_0.726|GO:0016020_0.726|GO:0006810_0.622|GO:0051179_0.622|GO:0051234_0.622|GO:0005622_0.583|GO:0005737_0.583|GO:0005773_0.550|GO:0043226_0.550|GO:0043227_0.550|GO:0043229_0.550|GO:0043231_0.550|GO:0012505_0.509
|
IPR011701+18-375+|IPR020846+14-414+|IPR036259+3-212_14-410_220-416+|IPR050930+2-416+
|
— |
PF07690+18-375+Major_Facilitator_Superfamily
|
— |
PTHR23506+2-416+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
48399.300
|
6.598
|
0.500
|
12.867
|
14.898
|
31.377
|
68.623
|
6.772
|
6.095
|
48.758
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
461.622
|
76.252
|
124.327
|
115.021
|
248.762
|
180.072
|
538.980
|
96.821
|
1.382
|
1500.971
|
858.290
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.471
|
0.457
|
— |
1.082
|
-0.452
|
1.592
|
-1.003
|
2.621
|
-10.320
|
6.712
|
— | — | — |
No JSON data available for plots.