Hg_chrom5_TN10mRNA_9369
Organism: Heterodera glycines Gene Locus: chr5:2941975-2945781 Feature type: polypeptideProtein Sequence
Length: 765
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.049 | 1.186 | 0.974 | 0.27 | 1.046 | 1.14 | 0.934 | 0.98 | 1.249 | 1.201 | 0.713 | 0.923 | 1.126 | 1.156 | 1.094 | 0.84 | 0.75 | 1.089 | 1.307 | 1.077 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8809
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
10-30
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.174
|
0.020
|
0.005
|
0.207
|
0.223
|
0.599
|
0.553
|
0.004
|
0.648
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001311
|
3.000
|
2.000
|
Hsc_gene_19818.t1;Hsc_gene_19844.t1
|
Hsc_gene_19818.t1
|
— |
Q5WN23.1 Glutamate carboxypeptidase 2 homolog [Caenorhabditis briggsae]
|
KAH7698662.1 Protein R57.1 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.769|GO:0005575_0.752|GO:0110165_0.739|GO:0016020_0.654|GO:0071944_0.583|GO:0005886_0.553|GO:0003674_0.543
|
IPR003137+181-264+|IPR007365+637-761+|IPR007484+365-559+|IPR036757+606-763_610-762+|IPR039373+18-762+|IPR046450+120-367+
|
— |
PF02225+181-264+PA_domain|PF04253+637-761+Transferrin_receptor-like_dimerisation_domain|PF04389+365-559+Peptidase_family_M28
|
G3DSA:3.40.630.10:FF:000101+336-598+N-acetylated_alpha-linked_acidic_dipeptidase_like_1|G3DSA:3.50.30.30:FF:000033+128-356+Glutamate_carboxypeptidase_2_homolog
|
PTHR10404+18-762+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-765
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
84826.180
|
6.031
|
-4.500
|
23.660
|
11.373
|
43.660
|
56.340
|
12.026
|
11.634
|
51.765
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.