Hg_chrom5_TN10mRNA_9370
Organism: Heterodera glycines Gene Locus: chr5:2947049-2957701 Feature type: polypeptideProtein Sequence
Length: 1,819
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.62 | 1.483 | 0.81 | 0.436 | 1.979 | 1.085 | 0.497 | 0.962 | 1.625 | 1.129 | 1.783 | 1.649 | 1.619 | 0.539 | 0.987 | 0.754 | 0.631 | 0.6 | 1.269 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8810
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm
|
— |
KKKR,KKKKK,KKIAEKEQENFGERNNKK,EKEKEKKEKITQKKKETKKSKNRREKHKQ
|
— | — | — | — | — | — |
0.017
|
— | — |
0.411
|
0.199
|
0.011
|
0.509
|
0.282
|
0.139
|
0.210
|
0.010
|
0.131
|
0.290
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001309
|
2.000
|
3.000
|
Hsc_gene_19819.t1;Hsc_gene_19819.t2;Hsc_gene_5134.t1
|
Hsc_gene_19819.t1;Hsc_gene_19819.t2
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.764|GO:0110165_0.764|GO:0005622_0.725|GO:0016020_0.677|GO:0043226_0.657|GO:0043229_0.649|GO:0008150_0.608|GO:0043227_0.601|GO:0043231_0.576|GO:0003674_0.548|GO:0009987_0.507
|
IPR007012+1519-1659+|IPR011068+1676-1768+|IPR043519+1294-1418_1295-1454+
|
— |
PF04928+1519-1659+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1279-1405+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
611-656;711-952
|
3.000
|
1-610;657-710;953-1819
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
213274.610
|
7.942
|
22.500
|
34.854
|
11.325
|
54.590
|
45.410
|
18.527
|
16.328
|
37.493
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1001.359
|
9.928
|
192.583
|
177.315
|
74.223
|
20.886
|
25.933
|
72.624
|
4005.104
|
1162.059
|
2380.507
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.046
|
4.019
|
— |
-1.286
|
-1.815
|
— |
1.708
|
-1.353
|
— |
-4.330
|
-3.678
|
— | — |
No JSON data available for plots.