Hg_chrom5_TN10mRNA_9371
Organism: Heterodera glycines Gene Locus: chr5:2958305-2962571 Feature type: polypeptideProtein Sequence
Length: 601
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.793 | 1.083 | 0.877 | 0.975 | 1.054 | 1.408 | 0.376 | 1.331 | 0.998 | 1.147 | 0.933 | 0.587 | 2.311 | 0.672 | 1.188 | 1.165 | 0.736 | 0.958 | 1.792 | 1.223 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8811
|
— | — |
1.333
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
FKRR,KKKRK,KKLAQFYGRIGLYRRSKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.079
|
0.071
|
0.004
|
0.216
|
0.535
|
0.230
|
0.881
|
0.015
|
0.205
|
0.314
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003767
|
2.000
|
1.000
|
Hsc_gene_19820.t2
|
Hsc_gene_19820.t1;Hsc_gene_19820.t2
|
— |
P83088.4 Alpha-(1,3)-fucosyltransferase C [Drosophila melanogaster]
|
KAF7636818.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.877|GO:0003674_0.822|GO:0003824_0.699|GO:0005575_0.666|GO:0110165_0.666|GO:0016740_0.645|GO:0016757_0.613|GO:0016758_0.613|GO:0008417_0.605|GO:0009987_0.601|GO:0008152_0.597|GO:0016020_0.567|GO:0005622_0.543|GO:0043226_0.516|GO:0071944_0.506
|
IPR001503+223-585_405-567+|IPR031481+256-374+|IPR038577+337-551+
|
— |
PF00852+405-567+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+256-374+Fucosyltransferase,_N-terminal
|
G3DSA:3.40.50.11660:FF:000002+339-548+Alpha-(1,3)-fucosyltransferase
|
PTHR48350+223-585+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-601
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
70301.990
|
8.042
|
13.000
|
25.790
|
17.471
|
48.586
|
51.414
|
14.642
|
11.148
|
44.759
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
420.243
|
46.243
|
177.175
|
219.249
|
103.710
|
102.771
|
87.538
|
446.505
|
650.747
|
906.804
|
797.066
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.711
|
2.108
|
0.414
|
-1.114
|
— | — |
2.016
|
-2.209
|
— | — | — | — | — |
No JSON data available for plots.