Hg_chrom5_TN10mRNA_9380
Organism: Heterodera glycines Gene Locus: chr5:2983022-2984905 Feature type: polypeptideProtein Sequence
Length: 498
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.331 | 0.7 | 0.329 | 0.831 | 0.904 | 1.184 | 3.227 | 1.305 | 0.491 | 0.434 | 0.213 | 0.709 | 0.446 | 2.51 | 0.533 | 0.861 | 0.79 | 0.548 | 0.0 | 0.532 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8820
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — |
0.903
|
0.298
|
0.000
|
— |
0.071
|
0.222
|
0.019
|
0.182
|
0.140
|
0.063
|
0.073
|
0.009
|
0.743
|
0.433
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009213
|
1.000
|
1.000
|
Hsc_gene_19837.t1
|
— | — |
P20631.1 Cuticle collagen 13 [Caenorhabditis elegans]
|
KAF7640060.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+3-55_6-54+|IPR008160+360-413_424-482+|IPR050632+297-496+
|
SM01088+3-55+
|
PF01391+360-413_424-482+Collagen_triple_helix_repeat_(20_copies)|PF01484+6-54+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+297-496+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
77-498
|
1.000
|
1-76
|
9ius_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.968
|
46524.450
|
5.037
|
-9.500
|
13.855
|
6.024
|
32.329
|
67.671
|
6.627
|
7.229
|
73.293
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
4948.782
|
8.935
|
5.369
|
34.023
|
15804.110
|
39705.453
|
64.209
|
95.440
|
11.057
|
748.552
|
432.483
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.795
|
2.764
|
8.828
|
1.345
|
-9.262
|
-8.813
|
— |
-6.241
|
— |
4.660
|
— | — |