Hg_chrom5_TN10mRNA_9381
Organism: Heterodera glycines Gene Locus: chr5:2986125-2992702 Feature type: polypeptideProtein Sequence
Length: 923
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.781 | 1.386 | 0.729 | 0.71 | 0.867 | 1.139 | 0.877 | 1.571 | 1.493 | 1.186 | 0.624 | 1.657 | 1.565 | 0.708 | 1.017 | 1.207 | 0.924 | 0.952 | 1.083 | 0.765 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8821
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.858
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRHR,PRWKRKI
|
— | — |
49-81
|
0.995
|
— | — |
0.000
|
— | — |
0.080
|
0.084
|
0.006
|
0.148
|
0.330
|
0.473
|
0.425
|
0.008
|
0.842
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009214
|
1.000
|
1.000
|
Hsc_gene_19838.t1
|
Hsc_gene_19838.t1
|
— |
B7Z0W9.2 Proton channel OtopLc [Drosophila melanogaster]
|
KAI1714476.1 otopetrin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015252|GO:0016020|GO:1902600
|
GO:0008150_0.968|GO:0009987_0.919|GO:0003674_0.877|GO:0051179_0.810|GO:0006810_0.807|GO:0051234_0.807|GO:0055085_0.747|GO:0006811_0.712|GO:0034220_0.710|GO:0098660_0.699|GO:0005215_0.698|GO:0022857_0.698|GO:0006812_0.695|GO:0098655_0.692|GO:0098662_0.692|GO:0015075_0.678|GO:0022803_0.677|GO:0005216_0.675|GO:0015267_0.675|GO:0008324_0.671|GO:0015318_0.671|GO:1902600_0.670|GO:0022890_0.664|GO:0005261_0.663|GO:0015078_0.650|GO:0015252_0.650|GO:0005575_0.534|GO:0110165_0.529
|
IPR004878+176-920_355-670_765-905+
|
— |
PF03189+355-670_765-905+Otopetrin
|
— |
PTHR21522+176-920+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
79-198;677-757
|
3.000
|
1-78;199-676;758-923
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
102965.490
|
7.436
|
13.500
|
21.452
|
12.784
|
45.937
|
54.063
|
12.243
|
9.209
|
50.163
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
682.904
|
100.972
|
166.608
|
293.317
|
392.893
|
1560.673
|
1096.111
|
274.878
|
1124.707
|
687.131
|
874.663
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.496
|
1.401
|
0.922
|
0.391
|
2.005
|
-0.500
|
-2.610
|
2.137
|
— | — | — | — | — |
No JSON data available for plots.