Hg_chrom5_TN10mRNA_9382
Organism: Heterodera glycines Gene Locus: chr5:2992863-2996019 Feature type: polypeptideProtein Sequence
Length: 573
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.258 | 1.299 | 0.73 | 0.181 | 1.105 | 0.582 | 0.519 | 1.222 | 1.28 | 1.509 | 0.873 | 1.335 | 2.182 | 0.772 | 1.14 | 0.773 | 0.887 | 0.846 | 1.611 | 0.719 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8822
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
PEKKRLK
|
— | — | — | — |
1-20
|
0.975
|
0.999
|
1.000
|
1.000
|
0.083
|
0.065
|
0.026
|
0.167
|
0.870
|
0.286
|
0.429
|
0.075
|
0.302
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002955
|
2.000
|
1.000
|
Hsc_gene_19839.t1
|
Hsc_gene_11882.t1;Hsc_gene_19839.t1;Hsc_gene_8482.t1;Hsc_gene_8484.t1
|
— |
Q18081.3 Putative UDP-glucuronosyltransferase ugt-48 [Caenorhabditis elegans]
|
KAF7640207.1 UDPGT domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.778|GO:0003674_0.734|GO:0003824_0.644|GO:0009987_0.619|GO:0005575_0.568|GO:0016740_0.566|GO:0110165_0.552|GO:0016757_0.539|GO:0008194_0.529
|
IPR002213+37-485_45-556+|IPR035595+385-428+|IPR050271+12-540+
|
— |
PF00201+45-556+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+304-483+UDP-glucuronosyltransferase
|
PTHR48043+12-540+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
569-573
|
1.000
|
1-568
|
6lf6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
65242.330
|
8.829
|
11.000
|
24.433
|
14.834
|
43.106
|
56.894
|
13.787
|
10.646
|
45.724
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
yellow
|
785.083
|
53.921
|
760.158
|
337.708
|
323.109
|
235.646
|
1831.890
|
936.889
|
623.851
|
1287.106
|
1002.854
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.590
|
2.510
|
-1.063
|
— |
-0.441
|
2.969
|
1.907
|
1.099
|
— | — | — | — | — |