Hg_chrom5_TN10mRNA_9384
Organism: Heterodera glycines Gene Locus: chr5:3000683-3002127 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 1.348 | 1.318 | 0.666 | 1.449 | 0.495 | 0.748 | 0.0 | 1.718 | 1.502 | 1.244 | 1.421 | 1.476 | 0.465 | 0.789 | 0.897 | 0.634 | 0.878 | 0.743 | 0.853 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8824
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.349
|
0.338
|
0.035
|
0.696
|
0.070
|
0.182
|
0.141
|
0.108
|
0.191
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009215
|
1.000
|
1.000
|
Hsc_gene_19841.t1
|
Hsc_gene_19841.t1
|
— | — |
KAI1707829.1 haloacid dehalogenase-like hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.762|GO:0110165_0.757|GO:0005622_0.716|GO:0005737_0.697|GO:0016020_0.665|GO:0008150_0.655|GO:0043226_0.647|GO:0043229_0.633|GO:0043227_0.615|GO:0003674_0.604|GO:0043231_0.597|GO:0009987_0.584|GO:0008152_0.512|GO:0003824_0.511
|
IPR006439+6-17_90-186_98-111_130-146_148-168_175-188+|IPR023198+21-83+|IPR023214+8-199+|IPR036412+7-190+|IPR052898+3-206+
|
— |
PF00702+6-180+haloacid_dehalogenase-like_hydrolase
|
— |
PTHR47829+3-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-207
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
23254.700
|
4.518
|
-8.000
|
28.019
|
9.179
|
45.894
|
54.106
|
12.077
|
15.942
|
46.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
78.437
|
12.651
|
43.386
|
64.580
|
91.488
|
77.498
|
107.030
|
50.232
|
73.583
|
120.399
|
100.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.552
|
2.216
|
0.682
|
0.471
|
— |
0.475
|
-0.724
|
1.229
|
— | — | — | — | — |
No JSON data available for plots.