Hg_chrom5_TN10mRNA_9385
Organism: Heterodera glycines Gene Locus: chr5:3006126-3008464 Feature type: polypeptideProtein Sequence
Length: 505
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.829 | 1.75 | 0.576 | 0.341 | 1.452 | 1.32 | 0.707 | 1.584 | 1.364 | 1.124 | 1.02 | 1.747 | 1.815 | 0.647 | 1.091 | 0.707 | 0.844 | 0.72 | 0.762 | 0.874 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8825
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
5-Not_Clustered
|
0.769
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
RKVVRVDLYRPNFAKRHRI
|
— | — | — | — | — |
0.666
|
0.264
|
0.000
|
— |
0.590
|
0.123
|
0.015
|
0.608
|
0.146
|
0.167
|
0.154
|
0.026
|
0.107
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009216
|
1.000
|
1.000
|
Hsc_gene_19843.t1
|
Hsc_gene_19843.t1
|
— | — |
KAI3410366.1 hypothetical protein GPALN_004467 [Globodera pallida]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
— |
IPR001841+296-344+|IPR013083+280-350+|IPR018957+296-344+
|
— |
PF00097+296-344+Zinc_finger,_C3HC4_type_(RING_finger)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
505-505
|
1.000
|
1-504
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
58063.100
|
7.841
|
9.000
|
27.129
|
13.663
|
49.901
|
50.099
|
15.248
|
11.881
|
42.970
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
458.865
|
38.289
|
48.159
|
252.830
|
235.017
|
147.527
|
25.940
|
34.385
|
1109.531
|
882.079
|
979.558
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.587
|
2.497
|
— |
-0.657
|
-2.498
|
-2.212
|
— | — | — | — | — | — |