Hg_chrom5_TN10mRNA_9386
Organism: Heterodera glycines Gene Locus: chr5:3025505-3029358 Feature type: polypeptideProtein Sequence
Length: 759
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.072 | 1.011 | 0.886 | 0.363 | 1.12 | 1.149 | 0.769 | 1.318 | 1.318 | 1.3 | 0.818 | 0.775 | 1.171 | 1.14 | 0.834 | 1.016 | 0.756 | 1.038 | 1.419 | 0.969 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8826
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
3-23
|
0.977
|
— | — | — | — |
0.287
|
— | — |
0.170
|
0.024
|
0.009
|
0.252
|
0.268
|
0.669
|
0.623
|
0.006
|
0.649
|
0.173
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001311
|
3.000
|
2.000
|
Hsc_gene_19818.t1;Hsc_gene_19844.t1
|
Hsc_gene_19844.t1
|
— |
P91406.2 Glutamate carboxypeptidase 2 homolog [Caenorhabditis elegans]
|
KAH7698662.1 Protein R57.1 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.775|GO:0005575_0.765|GO:0110165_0.752|GO:0016020_0.672|GO:0071944_0.585|GO:0005886_0.558|GO:0003674_0.534|GO:0009987_0.502
|
IPR003137+172-257+|IPR007365+629-755+|IPR007484+356-553+|IPR036757+600-757_604-756+|IPR039373+17-756+|IPR046450+111-358+
|
— |
PF02225+172-257+PA_domain|PF04253+629-755+Transferrin_receptor-like_dimerisation_domain|PF04389+356-553+Peptidase_family_M28
|
G3DSA:3.40.630.10:FF:000101+327-592+N-acetylated_alpha-linked_acidic_dipeptidase_like_1|G3DSA:3.50.30.30:FF:000033+119-347+Glutamate_carboxypeptidase_2_homolog
|
PTHR10404+17-756+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-759
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
84245.810
|
6.006
|
-6.000
|
23.715
|
11.989
|
44.269
|
55.731
|
12.121
|
11.594
|
50.461
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
magenta
|
512.106
|
125.636
|
516.978
|
651.274
|
711.765
|
891.207
|
1375.779
|
432.128
|
92.060
|
407.134
|
272.102
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.814
|
2.237
|
0.440
|
— |
0.340
|
0.638
|
-1.143
|
1.811
|
— | — | — | — | — |
No JSON data available for plots.